Gossypium hirsutum (upland cotton): 107907245
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Entry
107907245 CDS
T04793
Name
(RefSeq) protein argonaute PNH1 isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107907245
03036 Chromosome and associated proteins [BR:
ghi03036
]
107907245
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107907245
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107907245
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
107907245
microRNA pathway
RISC loading complex
107907245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
107907245
NCBI-ProteinID:
XP_016690015
UniProt:
A0A1U8JIA0
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Position
A05:complement(2072063..2081822)
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AA seq
948 aa
AA seq
DB search
MQPSMPIAEKNMPHMQMRDLKENYVVSKETLKGSMNQKKSSPQMMIKSGDRFEDGKKVLG
RRNGRRRGRGYKVDRFQDGKLEPNMGSTPCKSLMFHTRPGYGQLGTKCIVKANHFLAEIP
GSDLSHYSVEINPEVASRKLDKAIMTELVKLYRNSNLGTKLPVYDGRKNLYTAGSLPFTS
KVFNVMLADEDEETGNVRKRDFEVTIKFVAVASMAQLRNLISGKQVDTPQGALNIIDTVL
RELAAQRYLSVGRFLYSPTIRKPQALGGGVESWRGFYQSIRPTQMGLSLNIDMSTIAFIE
PLPVIDFVAQILGKDVYSRPMSDADRVKVKKALRGVKVEVTHRGNVRRKYRVSGLTTQPT
RELIFPLDEHMNMKSVVEYFQEMYGYTIRYAHLPCLQVGNEKKVNYLPMEACKIVEGQRY
TKGLNEKQITSLLKVSCQRPHEQELDILQTVQQNDYDHDPYAKEFGINISSKLASIDARV
LPAPWLKYSDTGKEKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTAHGFCQE
LVQMCQISGMEFDRDPVIPIYSARPDQVKKALKYVYHAAANKLEGKELELLIAILPDNNG
SLYGDLKRICETDLGLISQCCLTKHVFKISRQYLANLSLKINVKMGGRNTVLLDALSWRI
PLVSDIPTIIFGADVTHPESGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPHRQELIQDL
YKTWQDPQRGTVAGGMIRELLLAFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRK
ACASLEPTYQPPVTFIVVQKRHHTRLFANNHNDRSSTDKSGNILPGTVVDSKICHPTEFD
FYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAH
LAAYRARFYIEPEGSETAKSRCTRTTNGSSVRPLPALKDKVKNVMFYC
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgcagccttcaatgcccattgctgaaaaaaatatgcctcacatgcaaatgagagacctg
aaggagaactatgtggtgtcaaaagaaactctaaaggggtctatgaatcagaaaaaatca
tccccccaaatgatgatcaaaagtggggatagatttgaagatggaaagaaggttttagga
aggagaaatggaaggagaagaggccgagggtataaagtagataggtttcaagatggaaag
cttgagccaaacatgggttctactccatgcaagagccttatgtttcatacaaggcctggt
tatggccagttgggaaccaagtgtatcgttaaagctaaccattttcttgctgagatacca
ggatctgacttgagtcactatagtgtagaaataaacccagaagttgcttctcgtaaactg
gacaaagctataatgacagagctggttaaactatatagaaacagtaacttggggacgaag
cttcctgtttatgatggaaggaaaaacctatacactgctggatcactgccttttacttct
aaggtgttcaatgtaatgttggctgatgaagatgaagaaacaggcaatgttagaaaaaga
gattttgaagtgaccataaagtttgtagctgtagctagtatggcacaattgcgcaacctt
atatctggtaaacaagttgacacccctcaaggtgcccttaatattattgacacggtgtta
agagaactcgcggctcaaaggtacttatcggttggaaggtttctttattctcctactata
aggaaaccgcaagcattaggtggtggtgtagaatcatggcgtggcttctaccagagtata
aggcctactcaaatgggattgtcactgaatattgatatgtcaacgattgcgttcattgaa
ccattacctgtcattgattttgttgctcaaattttgggtaaagatgtttattcaaggccg
atgtccgatgcagatcgtgttaaggttaagaaagctcttagaggtgtcaaggtggaagtg
actcacagaggaaatgtacgcagaaagtaccgggtttcagggctaacaactcagccaaca
agagagctaattttcccacttgatgagcatatgaacatgaaatcagtggttgagtacttc
caagagatgtatggatataccattagatatgcacacctaccttgccttcaagtaggaaat
gagaagaaggtgaattatttgcctatggaggcttgcaagattgttgaaggacagagatat
actaaagggctgaatgaaaaacagattacttctctgctgaaagtttcatgccaaagaccc
catgaacaagaattagatatcttacagacagttcaacagaatgactatgatcatgatcct
tatgcaaaagagttcggcatcaatataagcagcaagcttgcatcaatcgacgctcgggtt
cttcctgcaccatggctgaagtatagtgacactggaaaagaaaaggaatacttgccccaa
gttggtcagtggaatatgatgaacaagaaagtgattaatggaagcactgtaagatactgg
gcttgtataaacttctcacgaagtgttcaagagagcactgcacatggtttttgtcaagag
ttggttcaaatgtgtcaaatttctggcatggaattcgatcgagaccctgtaattcctatc
tattcagctagaccagatcaagttaagaaggcactgaaatatgtataccatgctgctgca
aacaagcttgaaggaaaagaacttgaattactcattgccattcttccagacaacaatgga
tccttatatggcgatcttaaacgaatttgtgaaactgatctgggtttgatatctcaatgc
tgcctcacaaagcatgtcttcaagattagcagacagtacttggcaaatctctcgcttaaa
ataaacgtcaagatgggaggaagaaatactgtgctcttggatgctttaagttggagaatt
cctttggttagtgatattccgacaataatatttggagctgatgtaactcatccagagtcc
ggagaggactctagtccgtcgatagctgctgttgtggcctcacaagactggccagaagtg
accaagtatgctggacttgtatgtgctcagcctcatagacaagaacttattcaagattta
tacaagacctggcaggatcctcaacgaggaacagttgctggaggcatgatcagggagctc
ttacttgcatttaaaaaggccactggacaaaagccactgaggataatcttttacagagat
ggtgtgagtgaaggccaattctaccaggttctcttatacgaactcgacgctataagaaag
gcctgtgcatcactggaacccacttaccaacctccagttacattcattgtggttcagaag
aggcatcatactaggttgtttgctaacaatcacaacgacagaagcagcactgacaaaagt
ggaaatatattacccggtactgtggtggattctaagatctgtcatcctactgaatttgat
ttctatctttgtagccatgccggaatccagggaacgagtcgacctgctcattatcatgtt
ctctgggatgaaaacaacttcacagcagatgaaatccaatcactcacaaacaacctctgt
tacacgtatgctcggtgcacgcgatccgtttctgttgtgcctccagcatattatgctcat
ctagcagcctaccgagctcgtttctacattgaacctgaaggttccgaaaccgctaaatca
cgttgtacacgcacaaccaatggttcatcggttcggcctttaccagcattaaaagataaa
gtgaagaacgtgatgttttactgttaa
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