Gossypium hirsutum (upland cotton): 107907372
Help
Entry
107907372 CDS
T04793
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107907372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107907372
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Step II factors
107907372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
eIF2A
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
107907372
NCBI-ProteinID:
XP_016690218
UniProt:
A0A1U8JIT8
LinkDB
All DBs
Position
D05:239153..244566
Genome browser
AA seq
573 aa
AA seq
DB search
MDSLQIYADNSDEEDLSHQPSTLSADSSPPRLIPSKSAAPKVDDTMLALTAAEARQAQSR
PIDPTQHVVAFNPTYDQLWAPTYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQY
NTFHKYGYAADPSGSNYIGDLDALQKNDAISVYNIPQHEQKKRKIEREKDEDEVDPTEID
NPATDVWLMKNKRSPWAGKKEGVQTELTEEQKKYAEEYAKKKEEKGHKGEKGEHVVDKTT
FHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILS
AGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIKYWDTETGQV
ISTFSTGKVPYVVKLNPDEDKQNILLAGMSDKKIVQWDINTGQITQEYDQHLGAVNTITF
VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL
IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL
KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggatagtctccaaatatacgcagataatagtgatgaggaagacctaagtcaccagcca
tctactctgtctgcagactcttcacctccacggctcatcccctccaaatctgcagcacca
aaggttgatgacacaatgcttgccctaactgcagcagaagcacgccaagcccaatcaagg
cccattgatccaacccagcatgttgttgccttcaatccaacctatgaccaactctgggct
cctacctatggcccagctcatccatatgctaaggatggcattgcccagggcatgcgcaac
cacaagctgggatttgttgaggatgcctccatcgactcttttgtttttgatgagcaatac
aacaccttccacaaatatggttatgcggccgacccttcaggaagcaactatattggtgat
ttggatgctttacagaagaatgatgccatttcagtctataacatcccacaacatgagcaa
aagaagcgaaaaattgagagggagaaggatgaggatgaggttgatccaacggagatcgat
aatccagctactgatgtttggttgatgaagaataaaaggagtccttgggcaggtaaaaaa
gagggggtgcaaacagagttgacagaggagcaaaagaagtatgcagaggagtatgcaaag
aagaaagaagagaaaggccataaaggtgagaaaggcgagcacgtggtggataagactacc
tttcatggcaaagaggagcgagactaccaaggaaggtcttggattgcacctcctaaggat
gcaaaagcaacgaatgatcattgttatataccaaagagattagtacacacttggagtggg
cacacaaaaggtgtttcagctattcggttcttccccaaatatgggcacttaattctctct
gcagggatggatactaaagtgaagatatgggatgtgtttaattcaggaaagtgtatgagg
acatacatgggtcattctaaggcagtaagagatatttcattttgtaatgatggcactaaa
tttttgactgctggatatgacaagaacatcaagtactgggatactgaaaccgggcaggtt
atttctactttctcaactgggaaggttccgtatgtagttaagcttaaccctgatgaagat
aagcagaatattcttttagcgggtatgagtgataagaagattgttcagtgggatattaat
accggacaaattacacaagagtatgatcagcatttgggggcagtgaataccattacattt
gtggataacaaccggagattcgttacatcaagtgatgacaaatcacttcgagtgtgggaa
ttcggaattcctgttgttatcaagtatataagtgagcctcacatgcattctatgccatct
atttcgcttcaccccaacacaaattggcttgcagctcaaagtttggataaccaaattctt
atttacagtaccagagaaagatttcagcttaataagaaaaaaaggtttgctgggcacatt
gtggccggctatgcttgccaagtcaacttttcaccagatggacgctttgttatgtctgga
gatggagagggtaagtgctggttctgggactggaagagctgcaaagtttttaggactctc
aagtgccacgagggagtttgcattgggtgtgagtggcatcctttggagcaaagtaaagtt
gctacttgtggctgggatggcttgattaagtactgggactaa
DBGET
integrated database retrieval system
