Gossypium hirsutum (upland cotton): 107907649
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Entry
107907649 CDS
T04793
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107907649
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107907649
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
107907649
NCBI-ProteinID:
XP_040944260
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Position
D02:complement(43211678..43213938)
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AA seq
366 aa
AA seq
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MQLAFGFALSLLFGFAFGNGFFSEETISAFNFGLENEIFNEQVISSFSVMDYGATGNGQI
DDSQAFNKAWKDICNANAGGETVTLEIPRGKTFLLNPLVFQGPCKAKAIRIQLGGTLIAP
LSTSWANEGVDTWIQFSNVDNLYLDGDGKIDGRGSIWWQSCMKKSVYGIFFYCKRRPGAL
HFNNCNGLQLKGLTHLNSPRAHISIKNCKDVIVSDLKISAPDESPNTDGIDISDSTNVQI
LQSIIATGDDCVAINAGSSFINITGVVCGPGHGISIGSLGDGGAYDTVEQVHVKNCTLRD
TQNGVRIKTFQGCSGYARKISFEKIVLSNARNPIIINQFYQDNGKFSKGIMVRYSFLLYM
TLWNIY
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgcttttggttttgcactgtctcttttgtttggttttgctttcggaaatgga
ttcttcagtgaagaaactatttctgcttttaattttggtctcgaaaatgaaattttcaat
gagcaagtaatttcttcctttagtgttatggattatggagctactggaaatggccagata
gatgactctcaagcattcaataaagcttggaaggatatttgtaatgcaaatgcgggcgga
gaaactgtaacacttgaaatcccgcgagggaaaacattccttctaaacccacttgttttt
cagggtccatgcaaggccaaagccattcgtattcagcttggtggaaccctaattgcaccc
ctaagcacatcatgggcaaatgaaggagtggatacttggattcaattttcaaatgttgac
aacctttatcttgatggagatggcaaaattgatggcaggggttctatttggtggcaatct
tgcatgaaaaaatcagtttatggtatttttttttattgcaagcgtcgacctggtgcttta
cattttaacaattgcaatgggcttcaattaaagggactcactcatttgaacagtccaagg
gctcatatatcaataaaaaactgtaaagatgttattgtctctgatcttaagattagtgca
ccagatgaaagcccaaacacagatggaattgatatttccgattctaccaacgttcaaatt
ctacaatccatcattgcaactggtgatgattgtgttgctatcaacgctggttcatctttt
atcaatatcaccggtgttgtttgtggtccaggccatggtatcagtattgggagccttgga
gatggtggagcttatgacactgttgagcaagtacacgtgaaaaattgtactttaagggac
actcaaaatggtgtgaggatcaaaacatttcagggttgctctggttatgccagaaagatc
tcgtttgagaaaattgtacttagcaatgctagaaacccaattatcataaaccaattctat
caggataacggcaaattttcgaaaggaataatggtacgttattcattccttctatatatg
acactgtggaatatatattga
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