Gossypium hirsutum (upland cotton): 107907951
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Entry
107907951 CDS
T04793
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107907951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107907951
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
107907951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
107907951
NCBI-ProteinID:
XP_040951879
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All DBs
Position
D06:complement(57793311..57797923)
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AA seq
547 aa
AA seq
DB search
MSFDLMLNPSCSGCGSSQDLYGSNCKHMTLCVSCGKTMAENQGKCFECGAIVTRLIREYN
VRASPSTDKNYFIGRFMTGLPNFSKKKNAENRWSLQKDGLQGRQVTDALREKYKNKPWLL
EDETGQAQYQGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRRKTADGYERWMMKAANNGAAAFGEVEKTDEKETAAAGGRGRKKSTGEEEEGHVSDRG
EEDEEEEAARKNRLGLNKKSGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVG
NDPEERDLAPEVPAPPEIKEDEDEEDEEQEGGLSKSGKELKKLLGKASGLNDSDADEDDD
DEDVDDDMNFNPTPAPKQKDAPKEEPADNSPMKPAPSSSARGTPAASKSSKGKRKGDDTK
ASNGTPLKKVKSEPESKTSVKEENTSASKGSAPSKGTSSSAKAGSTSAASASSSKAGSAS
TAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISKIQKTNGPNN
YVVLREK
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgatctcatgctgaacccgtcctgcagcggctgcggatcctcccaagatctg
tacggtagcaactgcaagcacatgaccctctgcgtctcttgtggcaaaaccatggccgag
aaccaaggcaaatgcttcgaatgtggcgccattgtcacccgcttgattcgagaatacaat
gttagagcaagtcctagcaccgacaagaactactttattggtaggtttatgactgggttg
cccaatttttcaaagaagaaaaatgctgagaatagatggtctctgcaaaaagatgggcta
caaggacgccaagttactgatgctttgcgggagaaatataagaacaaaccttggttgttg
gaggatgaaacaggtcaggctcaatatcaaggtcaacttgaaggttcacagtcggcaact
tattacctgcttatgatgcaaggaaaggaatttgtagctattcctgctggttcttggtac
aattttaacaaggttgctcagtataagcaacttacattagaagaagctgaagaaaaaatg
aagaacaggaggaagactgcagatggttatgagagatggatgatgaaagctgcgaataat
ggcgctgctgcgtttggtgaagtggagaagactgatgaaaaagaaactgctgctgctggt
gggaggggacgtaaaaagtcaactggtgaggaggaagaaggtcatgtatcagatagagga
gaagaagatgaagaagaggaagctgccaggaagaataggcttggacttaacaaaaaaagt
ggtgacgatgatgaagaaggtccaaggggaggtgatcttgatatggatgatgatgatatt
gagaagggtgatgattgggagcatgaagaaatattcactgatgatgatgaagctgttggt
aacgatcctgaggaaagggatttggcccctgaagttcctgctccaccggaaatcaaggag
gatgaagacgaggaggatgaggagcaagaaggaggactgagtaagtccgggaaagagttg
aagaagctattagggaaagctagtgggcttaatgattcagatgcagacgaagatgatgat
gatgaggatgtggatgatgatatgaactttaatcctacaccagctcctaagcagaaggat
gcacctaaagaagaaccagctgacaacagtccaatgaaaccggcaccttcatcttctgct
cggggaaccccagctgcatctaagtcatcaaagggaaagagaaaaggtgatgatacaaaa
gcatcaaatggtacccctctgaagaaggttaaatcagaacctgagtcaaaaacttctgtg
aaggaggaaaatacatctgcttcgaaaggcagtgcgccttccaagggcacgtcatcctct
gcaaaagctggatcaacatcagctgccagtgcttcttcttctaaagcaggttcagcatca
actgctggacctgtaactgaagaagaaatcagggctgtgttattacaaaaggcacctgta
acaacatctgatcttgttgctaaatttaaagctaggttaaaatctccggaggacaagaag
gcttttgcagatattcttaggcgaatttctaagatacaaaagacgaatgggcctaataac
tacgtcgtgttgagagaaaagtga
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integrated database retrieval system
