Gossypium hirsutum (upland cotton): 107908815
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Entry
107908815 CDS
T04793
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107908815
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107908815
Membrane trafficking [BR:
ghi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
107908815
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107908815
Exosomal proteins of bladder cancer cells
107908815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
107908815
NCBI-ProteinID:
XP_016691580
UniProt:
A0A1U8JMS6
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Position
D02:70753436..70759140
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AA seq
1213 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
MSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEHPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDVSSLKKKGASPADDILR
LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAAHP
EINLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYDFSTQKETQIVPIRRPG
STTLNQCPRTLSYSPTENAVLICSDVDGGTYELYQIPKDSIGRSDLQEAKRGPGSSAIFV
ARNRFAVLDKSNNQVLIKNLKNEVVKKSGLPVPTDAIFYAGTGNLLCRSDDRVVVFDLQQ
RLVLGDLQTPFVKYVVWSSDMESVALLSKHSIIITSKKLVHQCTFHETIRVKSGAWDENG
VFIYTTLNHIKYCLPNGDSGIIRTLDVPIYLTKVSGNKIFCLDRDGKNKTLVIDATEYIF
KLSLLRKRYDHVMSMIRNSQLCGEAVIAYLQQKGFPEVALHFVKDEKTRFNLAIESGNIQ
IAVASAKEIDDKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLINGNLEKLSKM
LKIAEVKNDVMGQFHNALYLGDIQERVKILENAGHLPLAYVTASVHGLHDVAERLAAELG
DDVPSLPEGKKPSLLMPPAPVICCGDWPLLRVMKGIFEGGFDSTGRGAVEEEEEGADGDW
GEDLDMVDADDLQNRDVTAILEDGEVAEDNEEGGWDLEDLELPPEVETPRVNARSSVFVA
PTPGMPVNQIWTQRSSLAADHAAAGNFDTAMRLLSRQLGIRNFAPLKSMFLDLHTGSHSY
LRAFSSAPVVSLAVERGWSESASPNVRGPPALVFNFSQLDEKLKAGYKATTDGKFTEALR
LFLNILHTIPLIVVESRREVDEVKELIIIAKEYVLGLQMELKRRELKDNPVRQQELAAYF
THCNLQMPHLRLALRNAMTICFKAKNLATAANFARRLLETNPNENHSKAARQVLQASERN
MTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCTTRFVPTQEGQLCTICELAVIGA
DASGLLCSPSQIR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagtttgagacgaagagtaatagagtgaagggactaagtttccacaccaag
aggccgtggatcttagctagtcttcacagtggcgttattcagttatgggactatcggatg
gggactttgattgatcgatttgacgaacacgatggccctgttcgtggtgtccattttcac
atgtctcaacctttgtttgtctctggaggggatgactacaagataaaggtctggaactac
aagttgcatagatgtctttttacccttcttggacatcttgattatattcgtactgtgcaa
tttcatcatgaacatccatggattgtgagtgccagtgatgatcaaaccattcgcatatgg
aactggcagtctcgaacttgcatctctgtgttgactggtcataatcactatgttatgtgc
gcctcattccatcctaaagaagacctggttgtgtcggcctcccttgaccagactgttcga
gtttgggatgttagttccttgaaaaagaagggtgcctccccagcagatgacattttacgg
ttgagtcagatgaacacagatctttttggtggtgttgatgcagttgtcaagtatgtgttg
gaaggacatgaccgaggagtaaattgggctgcatttcatccaaccttgcctttgatagtc
tctggtgccgatgaccgccaagtgaaattgtggcgtatgaatgataccaaggcttgggaa
gtggataccttgagaggacacatgaataatgtgtcatgtgtcatgttccatgccaaacaa
gacatcattgtatccaattctgaggataaaagtattcgagtgtgggatgcaacaaagcga
actggacttcaaactttccgtcgagaacatgacaggttctggattcttgcggcccatcct
gagattaatcttttggcagctggacatgacagtggcatgattgtatttaagctagagaga
gaacggcctgcttttgcagttagtggggattctctgttttatgccaaggatcgattctta
aggtattatgacttttcaacacaaaaagagacacaaatagttcctatccggcggcccggt
tccacaaccttgaatcaatgtccaaggactctttcttatagtcccacagaaaatgccgtc
cttatctgctcagatgttgatggaggaacttatgagttgtatcagataccaaaagacagc
attggtaggagtgacttgcaggaggcaaagagaggtcctggtagttctgccatatttgtg
gctcggaaccgttttgctgtactcgacaaaagcaacaaccaagtcttaatcaagaatctt
aaaaatgaggttgttaaaaaaagtggtcttccagtgcctacggatgcaattttctatgct
ggaacaggtaatttattgtgtagatcagatgatagagtggttgtatttgatctccagcag
agacttgttcttggtgatctacaaacgccttttgtgaagtatgttgtttggtctagtgac
atggagagtgttgctttgctcagcaagcattccattatcattactagcaagaaacttgtg
caccagtgcacttttcatgagacaatacgagttaagagtggagcctgggatgaaaatggt
gtttttatttacaccactctaaaccatataaaatactgcctacccaatggagatagtgga
ataattcgaactcttgatgttccaatatacctaactaaggtttctggaaacaaaatattt
tgcctggaccgtgatgggaagaacaagacgctggtcattgatgctacagaatacattttt
aagctgtctctgcttcggaagaggtatgatcatgttatgagcatgataagaaactcccag
ctttgtggtgaggccgtgattgcttatctacaacagaaggggttccctgaagtggctctc
cattttgtgaaagatgagaaaactcggtttaacttggctatagagagtgggaacattcaa
atagctgttgcatcagctaaggagattgatgacaaggatcattggtataggttgggtgtg
gaagcccttcgccaaggcaatgcaggtatagttgaatatgcctaccagaggacaaagaac
tttgagaggttgtcgtttctttatctcataaatggtaacctggaaaagctgtccaagatg
ctgaagattgcagaagtcaagaacgacgttatgggccagtttcacaatgctttgtatctt
ggggatatccaagaacgtgtaaagatcttggagaatgctggtcatttgcctcttgcttat
gttacagcatcagtccatgggctacatgatgttgctgaaaggttagctgctgagttggga
gatgatgtcccttctttgccggaagggaaaaaaccttccttattgatgcctccggcaccc
gttatttgttgtggtgattggcccctgttgagagtaatgaaaggtatatttgaaggtgga
ttcgatagtactggcaggggtgcggtggaggaagaggaggagggtgcagatggtgattgg
ggtgaagatcttgatatggtcgatgctgatgacttgcagaacagagatgttactgcaatt
ttggaggatggggaagtggctgaagacaatgaagagggtggatgggaccttgaagacttg
gaactccctcctgaggtagagacaccaagggttaatgctcgttcttctgttttcgtggca
ccaactcctggtatgcctgtgaatcaaatttggactcagaggtcgtcacttgctgctgat
catgcggctgctggcaattttgatacagccatgcgtttgctaagcaggcaacttggaata
agaaactttgctcctttaaaatccatgtttctcgatcttcacactggcagccatagctat
cttcgtgcattttcatctgcgccagtggtgtccttggcagttgagaggggatggagtgag
tctgctagtcctaatgtgaggggtccacccgctctcgtattcaacttttctcagctggac
gagaagctgaaggctgggtacaaggccacaacagatggaaaatttaccgaggctcttcgg
cttttcctcaacattcttcatacaattccattgattgttgttgagtcgaggagggaagtt
gatgaagtcaaagagttaattatcatcgccaaggagtatgttcttggtctgcagatggag
cttaagcgtagagaattgaaagacaatccggtacgccagcaggagctcgctgcctacttc
acccattgcaaccttcaaatgcctcatctcagacttgctctgcgaaacgcaatgaccatc
tgtttcaaggcgaaaaacctggctacagccgctaacttcgccaggcgtcttctagaaaca
aaccctaacgagaaccattcaaaggcagcgaggcaagtactccaggcttcggagaggaat
atgacagatgcatctcagttaaactacgatttcaggaacccttttgtgacatgcggggca
acttacgtcccgatttaccgaggacagaaagatgtatcttgtccttactgtactactcgc
ttcgtgcctacccaggagggtcaattgtgtacaatctgtgagctcgcagtcatcggagca
gacgcatcaggtttgctctgttctccttctcaaattcgataa
DBGET
integrated database retrieval system
