Gossypium hirsutum (upland cotton): 107908893
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Entry
107908893 CDS
T04793
Name
(RefSeq) polyadenylate-binding protein 8
KO
K13126
polyadenylate-binding protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107908893
09123 Folding, sorting and degradation
03018 RNA degradation
107908893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107908893
03041 Spliceosome [BR:
ghi03041
]
107908893
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107908893
mRNA cycle factors
Stress granule specific factors
107908893
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Complex C specific factors
107908893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
SET_assoc
RRM_MARF1
PH_35
RBD_DGKtheta
MinC_N
DUF5062
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
107908893
NCBI-ProteinID:
XP_016691670
UniProt:
A0A1U8JN15
LinkDB
All DBs
Position
D02:69709397..69713462
Genome browser
AA seq
647 aa
AA seq
DB search
MAHVQVQGQSGGVNNGSGGANNQFVTSLYVGDLDPSVTETQLYEYFNHIGQLLTVRLCTD
LSTRRSLGYGYVNYGNPQDAARALELLNFTPLNGKPIRIMYSNRDPSLRKSGAGNIFIKN
LDKGIDQKALHDTFSAFGNILSCKLATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLN
DKQVYVGPFVRKQERDTSTSKTKFNNVYVKNLSESTTDEDLNQTFGEFGQITSAVVMRDA
DGKSKGFGFINFENADDAARAVEFLNGKKFDDKEWFVGKAQKKSEREAELKHRFEQTMKE
AADKFQGANLYVKNLDDSISDEKLKELFSQYGTITSCKVMRDPSGISKGSGFVAFSTPEE
ASRALAEMNGKMVVNKPLYVAQAQRKEDRRARLQAQFSQMRPLTMASSVAPRMPMYPPGG
PGLGQQIFYGQAPPIFPPQPGFGYQQQLVPGMRPGSAPMPNFFVPMVQQGQQGQRPGGRR
AGAVQQNQQPVPLMQQQMLPRGRVYRYPVGRGLPEVSMPNVPGGMLSVPYDMGSMPMRDA
PLSQPIPIGALASALANATPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH
LLESPEALKAKVAEAMEVLRTVAQQQQQAGGAADQLASLSLNDNLVS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatgttcaagttcagggacaaagtgggggcgttaacaatggatctggtggagcc
aataaccagtttgtaacctcgctatatgttggggatttggatccaagtgtgaccgagact
cagctttatgagtactttaaccatattggtcagctgcttacggttcggttatgcaccgat
ttgtcgacccggaggtcccttggttatggttatgtcaactatggcaatccccaagatgct
gcaagggcattggaacttctgaatttcactcctctgaatggaaagcctatccggattatg
tattccaaccgtgaccccagtcttcgtaaaagtggtgcagggaatatattcatcaagaat
ttagacaagggaatcgaccaaaaagctttgcatgatacgttttctgcatttggaaacatt
ctctcttgcaagctagccacagattcttctggccagtcaaaaggttacgggtttgtacaa
tttgacaacgaagaatctgcccaaaaagcaattgagaagttgaatggtatgctattgaat
gataagcaagtctatgtgggcccttttgttcgcaagcaagaaagagatacttctactagc
aagacaaaatttaacaatgtctacgtaaagaatctctcggaatcaactaccgatgaagac
ttgaatcaaacttttggtgaatttggtcagatcactagtgctgtggtaatgagggatgct
gatgggaaatccaagggctttgggtttatcaacttcgagaacgcagatgacgctgctaga
gccgttgagttcctcaatggaaagaaatttgacgataaggagtggtttgtcgggaaagct
caaaaaaaatctgaaagggaggctgaactgaaacatcgatttgagcagacaatgaaagag
gcagcagataaatttcaaggagcaaacttgtatgtcaagaatttggatgatagcataagt
gacgaaaagcttaaagagctattctctcaatatggtaccataacatcatgcaaggttatg
cgggaccctagtggaataagtaaaggatcagggtttgttgcgttttcgaccccagaagaa
gcttctagagctcttgcagagatgaatggcaaaatggttgtcaacaaacctctctatgtt
gcacaagctcaaaggaaggaagataggagagccaggttgcaggctcagttttctcaaatg
cgaccacttacaatggcatcttctgttgcaccacgaatgccgatgtacccacctggtggt
ccaggtcttggacagcaaatattctatggtcaagcacctccgattttcccccctcagcct
ggatttggatatcagcagcagcttgttccgggtatgaggcctggcagtgctccaatgcca
aatttcttcgtaccaatggttcagcaaggccaacagggtcagcgtcctggtgggagaagg
gctggagctgttcagcaaaatcagcaaccagttccattaatgcagcagcagatgctaccc
cgagggcgggtctatcgctatccagtggggcgtggtctacctgaagtttcgatgcctaat
gttccaggaggcatgctttctgttccatatgatatgggcagcatgccaatgcgtgatgca
ccactttctcaaccaattccaattggagctttggcctcagctcttgcaaatgctactcca
gaacagcaaagaacgatgctgggggagaatctctatccacttgtcgagcagctggaaccc
gatgcagcagccaaagtaacagggatgcttctggagatggaccagacggaggttttacac
ttgctcgagtcaccagaagctctaaaagccaaagttgcagaagcaatggaagttctgagg
actgtagcacagcaacagcagcaagctggtggagctgctgatcagctggcttcattgtct
ttaaatgataaccttgtttcatga
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