Gossypium hirsutum (upland cotton): 107908917
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Entry
107908917 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107908917
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107908917
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107908917
NCBI-ProteinID:
XP_016691701
UniProt:
A0A1U8JN56
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Position
D02:68755465..68757635
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AA seq
454 aa
AA seq
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MEITMLRLVFLFSFFTTIPRLWANIVEFDDFWKQREEEAWKIALASYEPNPENVTNHLNY
KVNKALNKRSSNKIIEFKGVITNDTIRYLRGKHKKYIGPCMATNPIDRCWRCRENWAENR
KRLALCGLGFGRKATGGDEGDYYLVTDNSDDDVLEPKPGTLRHAVIQNKPLWIIFAKDMH
IKLSKELIVQSNKTIDGRGANVHIAHGCGITLQFVHNIIIHNIHIHHVIESQGGLIRDSE
DHYGYRTIGDGDGISIFGSSNIWLDHISMSECQDGLIDVIQGSTAITISNCHFTHHDHVI
LLGASDTYSNDQYMQVTIAFNHFGKELIQRMPRCRWGFFHVVNNDYTHWKMYAIGGSTHP
TIISEGNRYIAPDDPNTKEITNRNYAPESEWKNWVWRSEGDLYMNGAFFRTSGPPSPPNL
NFSEKDVIKAKPATFVRRLTRFAGTLDCKEYVKC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggagataactatgctaaggcttgtttttctcttttctttttttaccacaattccaagg
ctatgggcaaatattgttgaatttgatgacttttggaagcaacgtgaagaagaagcttgg
aagattgccctagcatcttatgaaccgaacccagaaaatgttactaatcacctgaactac
aaagttaacaaggctcttaataaaagaagttctaacaaaatcattgaatttaagggtgtt
attactaatgacacaataagatacttgaggggtaaacacaagaagtacattggtccatgt
atggcgactaatccgattgataggtgttggcgatgtagagagaactgggctgagaatcgt
aaaagattggcgctatgtgggcttggttttggtcgtaaagctactggtggagatgaagga
gattactatttagtgacagataattctgatgatgatgttttagaacctaaaccaggaact
ttacgtcatgctgtgatccagaataagccgttgtggatcatttttgctaaggatatgcac
atcaaattatcaaaggagctaattgttcaaagcaataagaccattgatggtcgtggagca
aatgttcatatagcacatggatgtggaattacacttcaatttgtgcacaatatcatcatt
cataacattcatattcatcatgttattgaaagtcaaggtggcctaattagggattctgaa
gatcactacggttatcgaacaatcggtgatggagatgggatttctatctttggatcatca
aatatttggcttgatcatatttccatgtctgagtgccaagatggacttattgatgtaata
caaggttccactgccatcaccatttcaaattgccatttcacacatcatgatcatgtgata
ttgttaggagcaagtgacacttattctaatgatcaatacatgcaagtcacaattgcgttc
aaccattttggaaaagaattgatacaaagaatgcctagatgtcgatggggattctttcat
gttgttaacaatgactacactcattggaaaatgtatgccattggtggtagcacgcatcct
actattattagcgaaggcaacaggtatattgccccagatgaccccaataccaaagagata
actaataggaactatgcaccagaatcagaatggaagaattgggtatggagatcagaagga
gacttgtacatgaatggagccttcttcagaacttctgggccaccctcacctcctaatttg
aactttagcgagaaagatgtgatcaaagccaagcctgcaacatttgttagaagactcaca
cgttttgcagggactcttgattgcaaggaatatgtcaagtgctag
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