Gossypium hirsutum (upland cotton): 107909088
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Entry
107909088 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: RNA helicase aquarius
KO
K12874
intron-binding protein aquarius
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107909088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107909088
Spliceosome [BR:
ghi03041
]
Complex B
Other components
Prp19-related factors
107909088
Complex C
107909088
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
ResIII
UvrD_C_2
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
107909088
NCBI-ProteinID:
XP_040954866
UniProt:
A0ABM3AJ52
LinkDB
All DBs
Position
D08:complement(66801245..66809893)
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AA seq
1540 aa
AA seq
DB search
MTKVHGTGVYDFKRHHVAEYPVELADKPETKPSHSSSLPSSITLSEIQRDQLTRIAAANW
LKSGGSKPEKPFDPQLVKEIYETELTVKSEGKSQRKTVPLQRVMILEVSQYLENYLWPNF
DAETASYEHVMSMILMVNEKFRENVAAWGCFYDRKDVFTGFLERVLRLKEGRELTIAEKT
NYLVFMINAFQSLEDEIVRETVLRLASLRSWHSLSYGRFQMELCLNPDLIKKWKRMIKKE
SDDAKKLGVRLDPLSSLEVNFLRNLIEEFLEVLDHKVFTQKNPVSEDDELNASSIFDQVD
DASILYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSALYRHDKGKLFAQLVDL
LQFYENFEINDHVGTQLTDDEVLQSHYDRFQSFQLLAFKKVPKLKELALANVGAIHKRVD
LSKKLSVLSPGELKDLVCSKLKLVSNEDPWSDRVDFLIEVMVSXFEKHQSQKEAINALPL
YPNEQIMWDESVVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQ
EAIPHLLSYINNEGETAFRGWSRMAVPIREFKITEVKQPNIGEVKPASVTAAITYSISSY
KSQIRSEWDALKEHDVLFLLSISPSFKPLSAEEEAKASVPQKLGLQYVRGCEIIEIRDEE
GTLMNDFSGRTKREEWKPPKGELRTVTVALDAAQYHMDVTDIAEKGTEDVYGTFNVLMRR
KPKENNFKAILESIRDLMNEYCIVPDWLHKIFLGYGHPSAAQWTNMPDLLETVDFKDTFL
NADHLKESFSHYQVSFVDSDGRETLDPRPPFRIKLPRSFKSDTHAPSENGRPDTGVSDAK
MVDACVEKEKLIVEAYIPPDPGPYPQDQPKQNSVRFTPTQIGAIISGIQPGLTMVVGPPG
TGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMERDVPARYLLRLGQGEQEL
ATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQ
FIAACAGNEDKPAFVQDHFPFKEFFSNTSQAVFTGQSFEKDMRAAKGCFRHLKTMFQELE
ECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILE
IETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIP
YIELNAQGRARPSIAQLYNWRYRDLGDLPSVKEEAIFYRANAGFSYDYQLVDVPDYHGRG
ESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCLPYD
FIGPPCKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRRSL
FEQCYELQPTFQRLLQRPDHLALNLNEGTSFTERHVDDIGHPYLVSSVEEMANIVFGRID
QLQQAQAMYQYMAYSEQFTGISEEQNNEQDSTSPNQAMEVDTSVAENGGINNGVHENNGQ
EAKEDGEDHANGEDGVLPSEDHPNTENETQVSTNDENTVT
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaggttcacggaaccggcgtttacgacttcaagcgccaccatgtggcggagtac
ccggttgagttagcggacaaaccggaaacgaaaccttctcacagttcatcccttccgagc
tctattactttgtctgaaatccagcgggaccagctgactagaatagcagccgcgaattgg
ctgaagagcggtggttcgaagcctgaaaagccgttcgaccctcagctggttaaggagatt
tatgagaccgagcttacggtgaagtcggaagggaagtctcagaggaaaactgtgccgctg
cagagggttatgatattggaggttagtcagtatttggagaattacttatggccgaatttt
gatgctgagacggcttcgtatgagcatgtcatgtccatgattttgatggtcaatgagaag
tttcgagagaatgtggctgcttggggatgcttttatgataggaaggatgtgttcacagga
ttccttgagagggttcttcggcttaaggagggaagagaattaaccattgcagagaaaacg
aattatctggttttcatgatcaatgcttttcagagtttggaagatgaaattgtcagggaa
actgtccttagattagcaagtctgcgatcttggcacagtttgtcgtatggccgttttcag
atggaactttgtctaaatccagatttgatcaagaaatggaaaagaatgataaagaaagaa
tctgatgatgccaagaagctaggagtgcgtcttgatcccttatcttcattggaagttaac
ttcttgagaaatctgatagaagagtttcttgaggtgcttgatcataaggtttttacccag
aagaatcctgtcagtgaagatgatgaacttaatgcttctagtattttcgatcaagttgat
gatgcttctattttgtactgtgaaaggtttatggagtttctcattgatttattgagtcag
ctgccaacaaggaggtatctgaggcctctcgtggctgatgtagctgtagttgccaaatgc
catttaagtgctctttatagacatgacaaagggaaactctttgcacaacttgtggacttg
ctacagttctatgaaaattttgagataaatgatcatgttggcactcagttgacggatgat
gaggtgctccaatctcattatgatcgttttcaatccttccaactgcttgcttttaagaaa
gttcccaagttgaaagaacttgcactggccaatgttggtgcaatacacaagcgggtggat
ctctcaaagaaattgtctgtactttctcctggagaattaaaggacttggtttgctctaag
ctcaaactggtttcaaatgaagatccttggtcagacagggttgattttcttattgaggtt
atggtctctntttttgagaagcaccagtctcaaaaagaagccataaatgctcttcctctc
tacccaaatgagcagattatgtgggatgaaagcgttgtgccgagtattaattactctggt
gaaggttgtctcgctcttcctaagctgaacctgcaattcttaacactccatgattatctt
ctaaggaatttcaatctcttccgtctggagtctacttatgaaattcgtgaggacatccag
gaagccattcctcaccttctttcctatatcaataatgagggagaaactgctttccgtggc
tggtcaagaatggctgtgccaattagagaattcaagatcactgaggtaaagcagccaaat
attggagaagtcaagcctgcttctgtaactgcagcgattacatacagcatttctagttat
aaatcacaaataagatcagaatgggatgcccttaaggagcatgatgttttatttttgcta
tctattagcccctcatttaaacctctaagtgcagaggaagaggctaaggctagtgtgcca
cagaagcttggtctgcagtatgtacgaggatgtgaaattattgagattcgtgatgaggag
gggactctcatgaatgatttcagtggaagaactaaacgtgaggaatggaagccaccaaaa
ggtgaactgagaactgtgactgttgctttagatgctgcacagtatcacatggatgtcact
gacattgctgaaaaaggtactgaagatgtttatgggacgttcaatgtgttgatgaggagg
aagcctaaggaaaataacttcaaagcaattttagagtctatcagagatcttatgaatgaa
tattgtattgttcctgattggttgcataaaatatttttgggctatgggcatccttctgct
gcacagtggacaaacatgcctgatcttctggagacagtggatttcaaagatacttttctt
aatgcagatcatctgaaagagagtttttcacattatcaggtttcctttgttgattcagat
ggtagggaaactttggatccacgaccaccattccgcatcaagcttcctcggtcatttaaa
agtgatactcatgctccatcagaaaatggaagacctgatactggtgtcagtgatgccaag
atggtagatgcttgtgttgagaaagaaaaactaattgttgaagcatatatccctcctgac
ccaggtccttatcctcaagatcaaccaaaacagaactctgttagatttacacctactcag
attggagcaatcatatcaggtattcagcctggattaactatggttgtgggtccaccagga
acggggaaaactgatacggcagtgcaaatattgaatgttctctatcacaattgcccgtcc
cagagaacattaataattactcattctaatcaagctttgaatgacctttttgagaagata
atggagagagatgtgcctgctcgctatcttcttcgtcttggtcagggtgagcaagagcta
gcaactgacttggacttcagtaggcagggccgtgtgaatgctatgcttgttcgacggctg
gaactgcttagtgaggtagagaggcttgcaaggtcactacaacttcccgaagatgtaggg
tatacttgtgaaactgctggatatttttggttgctccatgtatattcacgctgggagcaa
tttattgctgcgtgtgcgggtaatgaagataaaccggcatttgtccaagaccacttccct
ttcaaagagttcttctccaacacctctcaggcagtctttactggccaatcatttgagaaa
gacatgcgggcagccaagggttgcttccgtcatcttaagactatgttccaagagcttgaa
gagtgcagggcatttgaattgctcaaatcaacagctgatcgagccaattacctgatgacc
aagcaggcaaagattgtggcaatgacatgtacccatgcagccctaaagagaaaagatttt
cttcaacttggtttcaaatatgacaacttgttgatggaagaaagtgctcaaattctcgag
attgaaactttcatcccaatgttgcttcaaaggcaggaggatggttatgcacgacttaaa
cgctgcatattgattggtgatcatcaccagctgcctcctgttgtgaaaaatatggctttc
caaaagtatagccatatggatcaaagtttgtttaccagatttgttcgactgggtattcct
tacattgagcttaatgcccagggtagagccaggccaagtatagcccaactttacaactgg
aggtaccgggatttgggggaccttccttcggtgaaagaggaagctatattctatagagca
aatgctggattttcctatgattaccaattagtggatgtacctgactaccatgggagaggt
gagtctgctccctctccttggttctatcaaaatgaaggcgaagctgaatatgttgtcagt
gtctatatatacatgcgattgcttggctaccctgcaaataaaatttccatcttgacaact
tacaatggtcagaagcttctaattcgtgatgttatcaatagacgatgccttccatatgat
tttattggtccaccgtgtaaggttactacagttgataagtttcaagggcagcaaaatgat
ttcattttgctttctcttgttcgtactcgctttgttgggcaccttcgtgatgttagaaga
ttggtggttgccatgtcacgtgctcgccttggcttgtatgtcttttgtcgccgttctctg
tttgaacagtgttatgaactccaacctactttccagcggctgcttcaaagacctgatcat
cttgctctaaatttgaatgagggcacatcatttactgaacgtcatgttgatgacattggg
catccatatcttgttagcagtgttgaggagatggctaacatagtttttgggagaatagat
caattacaacaggcacaagccatgtatcagtacatggcttattctgaacaattcactgga
atatccgaggagcaaaacaatgaacaggattcaacgtccccaaaccaggcaatggaagtt
gatacctcagtggctgaaaacggtggaattaataacggtgtacatgaaaacaacggacag
gaagctaaagaagatggagaggatcatgcaaatggtgaagacggggtgctaccttcagag
gaccatcccaatacggaaaacgaaacccaagttagcacaaatgatgaaaacacggtgacc
tag
DBGET
integrated database retrieval system
