KEGG   Gossypium hirsutum (upland cotton): 107909190
Entry
107909190         CDS       T04793                                 
Name
(RefSeq) uncharacterized protein LOC107909190
  KO
K03873  elongin-B
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107909190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ghi04121]
    107909190
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107909190
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul2 complex
    Adoptor protein
     107909190
   Cul5 complex
     107909190
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     107909190
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Dsc3_N UBL_UBAC1 DUF3969 Ubiquitin_2 Rad60-SLD_2
Other DBs
NCBI-GeneID: 107909190
NCBI-ProteinID: XP_040931181
UniProt: A0ABM2YKW3
LinkDB
Position
A08:125971927..125976350
AA seq 101 aa
MYIRVKRSKTTYFIQCDPTETTLDIKQKLHTLIDQPVNDQRLILMNTGDILEDSKTLADQ
KVENDAVVALTLRKDDNEFEDVNIVKPHDFYQSRDTDSGNW
NT seq 306 nt   +upstreamnt  +downstreamnt
atgtacatccgtgtgaagcgtagcaagacaacatactttatccagtgtgatccaactgaa
actaccctagacattaagcaaaagttgcataccctcattgatcaacctgttaatgatcag
cgtttgatccttatgaatactggggatatattagaggattcaaaaactttggcagatcag
aaggttgaaaatgatgctgttgttgcactgaccttgagaaaagatgacaacgagttcgag
gatgtcaacatagtaaaaccgcatgatttctaccaatctcgtgacacagatagtggaaat
tggtga

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