Gossypium hirsutum (upland cotton): 107909540
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Entry
107909540 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107909540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107909540
03012 Translation factors [BR:
ghi03012
]
107909540
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107909540
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107909540
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107909540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NACHT
Dicer_dimer
RsgA_GTPase
NV_polyhedrin
T2SSE
AAA_23
Motif
Other DBs
NCBI-GeneID:
107909540
NCBI-ProteinID:
XP_016692602
UniProt:
A0A1U8JQQ0
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All DBs
Position
D02:complement(64158319..64178247)
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AA seq
1215 aa
AA seq
DB search
MPPSYSPHFLPFSSQFLTHTIKPSLFSPTMKDRPPSSYGAVYVPPHHRLISSPNNQDATK
NSSAPGIHSKLRDHQNTPILNAKGTASPPSLPHLQQQQRQQQQGTYNNNNGSKNSNNQNA
QYNSAYCLGISENVSDRQLELSLQSGTFDEANIEEWKRKLAMLLHDDGKQEFVSREKKDR
RDFEQIAALASRMGLYSHLYSKVAVFSKLPLPNYRFDLDDKRPQREVSLNFGLLKRVNAY
LGEYLSKKSRNKESFSDNCFSRSSSNSSIVTEEGLFEQPEPLASGTAVMEKILLRRSSLL
RDQQQAWQESLEGREMLEFRQSLPAYKEKDTILTAILQNQVVIISGETGCGKTTQIPQFI
LESEIDSARGAFCSIICTQPRRISAISVSERVASERGEKLGESVGYKVRLEGIKGRDTRL
LFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELKLILMSA
TLDAELFSSYFDGAPLIHIPGFTYPVRTHFLENILEMTGYRLTPSNQIDDYGQERMWKMS
KQAPRKRKSQIVSSVEDALRAADFKDFSPQIQESLSCWNPDCIGFNLVEYLLSYICENER
PGAVLVFMTGWDDISSLKDKLQAHPVLGDPSRVLLLTCHGSMASSEQKLIFEEPEDGVRK
IVLTTNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWVSKVSTQQRRGRAGRV
QPGECYHLYPRCVYDAFTEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPKLLA
VQNAIEYLKVIGALDENENLTVLGRYLTMLPVEPKLGKMLILGAILNCLDPVLTIVAGLS
VRDPFLTPLDKKDLAETAKLQFSHDHSDHLALVRAYEGWKEAEKDLAGYDYCWKNFLSAQ
SMKAIDSLREEFLSLLKDTGLIDGYATSCNDWSYDQHLIRAIICYGLYPGICSVVHNEKS
FSLKTMEDGPVLLYSNSVNARESRIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGS
ISRGDVDGHLKMLGGYLEFFMQPAIAEKYLSLRREFDELIQNKLLNPQIVLHLHHELISA
IRLLVSEDQCDGRFVFGRPDLKPSNMPVVPPQRSLISRTESGPGGDNSKSQLQTLVTRAG
YAAPIYKTSQLENNQFQATVEFNGMQIIGQPCNNKKSAEKDAAAEALQWLMSGTRTGHEY
INYMSMFLKKSKRDN
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgcccccctcttactctccgcatttccttcctttctcttcacaatttctcacccacacc
ataaaaccctcactcttttctccgacgatgaaggatcggcctccgtcctcgtacggcgcc
gtctacgtccctccccaccaccgtctcatctcctctcccaacaaccaagatgctaccaag
aactcctccgcccccgggattcactccaagcttcgcgaccaccaaaacacacccattttg
aacgctaagggcactgcttctcctccttctttgccacacttgcaacagcagcagcgacag
caacagcaagggacttataataacaataacggtagtaaaaacagtaataatcaaaatgca
cagtataattcggcttactgtctggggatttccgagaatgtctctgatcgccagctggaa
ttgtctttgcaatcgggtacctttgatgaagctaacattgaagagtggaagcgaaagcta
gccatgcttctacatgatgatgggaaacaggagttcgtatcaagggagaagaaggacagg
cgagactttgagcaaatagcagctttggcaagcagaatgggtttgtatagccatctttat
tccaaagttgctgtcttcagtaagttgcccctgcctaactacagatttgacctggatgat
aagcgtccacagagggaggtgagcttaaattttggtttgttgaagagagtcaacgcctat
cttggagagtacctttctaaaaagtctaggaataaggaaagcttttcggataattgtttt
tcaagatcaagcagtaatagcagtatagttactgaagaaggactttttgagcagccagag
ccattagcatctggcacagctgttatggagaaaattcttctgcggagaagttcgctgctg
cgtgatcagcaacaagcgtggcaggagtctcttgaaggaagagaaatgctagaattccgt
caaagtcttcctgcttataaagagaaagataccatattgactgccattttacagaatcag
gttgttattatctcaggtgaaacaggatgtggcaagaccacacaaattccccaatttatt
ttagaatctgagatagattctgcgcgcggagctttttgtagcattatatgtacgcaaccc
aggcgaatatctgctatatctgtttcagaaagagttgcttcagaaagaggagagaaattg
ggtgaatctgttggatataaagtacggcttgagggtattaaagggagggatacccgtctt
ctcttttgcacaacaggcattttgttgagaaggctactagttgatagaaatttaaaaggt
gtaactcatgtcattgtggatgagattcatgaacgagggatgaatgaagatttcctactc
attgtccttaaagatctccttcctcgccgcccagaattaaagctgattttgatgagtgca
actttggatgctgagcttttctcctcgtattttgatggggcacctttaatccacattcca
ggttttacgtacccagttcgaacacattttttggagaatattttggaaatgacaggttat
aggttgactccatctaatcaaattgatgattatggacaagaaagaatgtggaaaatgagt
aagcaagccccgagaaagaggaagagccaaattgtctcttctgttgaggatgcgctccgg
gcagctgattttaaggatttcagcccgcagattcaggagtctttgtcatgttggaatcct
gattgtattggttttaatctcgtagaatatcttttatcctatatctgtgagaatgagagg
cccggtgcagttctagtctttatgactgggtgggatgacataagttctctgaaggataag
ctgcaagctcatccagtccttggagatcctagtcgagttttgctacttacttgccatggt
tctatggcgagttctgagcagaagttaatttttgaagagcctgaagatggagtgaggaaa
atagtattaactactaatattgctgagacaagcataacaattaatgatgttgtttttgtt
cttgattgtggaaaggccaaggagacatcgtacgacgcattgaataacactccttgtttg
ctaccatcatgggtttccaaggtttctactcaacaaagaagaggaagagctggccgagtg
cagcctggagagtgttaccatctctatcctcgatgtgtatatgatgccttcactgaatat
caattacctgaaattttgagaacacctttgcagtctctttgtctgcaaatcaaaagtttg
aaactcggaagtatatctgaattcctatcaagggcattgcagtcaccaaagttactggcg
gttcaaaatgccattgaatatttaaaagtcatcggggccttggatgagaatgaaaatctg
actgtgctggggcgttatttgactatgcttccagtggagccaaaacttgggaagatgctc
atccttggtgctattcttaattgcctggatcctgtgttgactattgttgctggtcttagt
gttagagatccttttttgacaccattagacaagaaagatcttgcagagactgcaaagttg
caattttcccatgatcatagtgaccaccttgcacttgtccgggcttacgagggctggaaa
gaagccgagaaagaccttgctggatatgattattgctggaaaaattttctttctgcacaa
tcaatgaaggcaattgattctcttagggaggagtttctttcattgctcaaggataccggt
cttattgacggctatgcaactagctgtaatgactggagctatgatcagcatctcatccga
gcaattatttgttatgggctttatcctggaatttgctctgtcgtgcataacgagaaatca
ttttcactgaaaactatggaggatggacctgtacttctttactcgaactctgttaatgct
cgggaatctagaattccgtatccttggctggttttcaatgagaagataaaagtgaactct
gttttcctgcgggattcaacagctgtctctgattcagtgcttctcctgtttggtggtagc
atctcaagaggagatgttgatggacacttgaagatgttgggagggtatttagaatttttc
atgcaacctgctatagctgaaaaatatctaagtttaaggagagaatttgatgagctgatt
caaaataaattactgaatccccaaatagtcctacatcttcatcatgagctcatttctgca
atacggttgctggtttctgaggatcagtgtgatggaagatttgtatttggccgtccagat
cttaaaccatcaaatatgcctgttgttccaccacaacgttctttgatttcaaggacagag
agtggtcccgggggtgataattctaaaagtcagctccaaacactggtcactagggcagga
tatgctgcaccaatctacaagacaagtcaattggaaaacaatcagttccaagctactgtt
gagttcaatggtatgcaaatcatagggcagccttgcaacaacaagaagagtgcagaaaag
gatgctgcagctgaggctttgcagtggctgatgagtggtacccggacaggccatgagtat
atcaattatatgtcgatgtttctgaagaaaagcaagagggataactga
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integrated database retrieval system
