Gossypium hirsutum (upland cotton): 107909736
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Entry
107909736 CDS
T04793
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107909736
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107909736
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107909736
NCBI-ProteinID:
XP_040944834
UniProt:
A0ABM2ZQB4
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Position
D02:58674275..58676244
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AA seq
406 aa
AA seq
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MAIPLSFFLLLFPLLAPTFVFSSPVQDPEQVVQQVNESIRNATMARRSLGFLSCGTGNPI
DDCWRCDHHWEKNRQKLADCAIGFGKHAIGGRDGKIYVVTDPSDHDPVNPKPGNLRYAVI
QDEPLWIIFARDMTIKLKEELLMNSFKTIDGRGVSVHISGGPCITVQYVTNIIIHGINIH
DCKRGGNAYVRDSPTHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAI
TISNNYLTHHNKVMLLGHSDTYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSADPTINSQGNRFLAPNDADNKEVTKHEDAPQSQWKHWNWRSEGDLMLNG
AFFTASGTGASSSYAKASSLGARPSSLVSSLTAGAGALVCKKGSHC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccattgtccttctttctactgcttttccctctcttggctcccacatttgtt
ttctcctcaccagttcaggaccccgagcaagtagtccaacaagtcaatgagagcataaga
aatgctactatggcgaggaggagcttggggtttctctcatgtggaaccggcaatcccatc
gatgattgctggcggtgcgaccatcattgggagaagaaccgtcagaagctagccgactgc
gccattgggttcggcaagcatgccattggtgggagagatgggaaaatatatgtggttact
gaccctagtgaccatgaccctgttaatcctaaacccggaaaccttcgatatgctgtcatc
caagatgaacctttatggatcattttcgctcgtgacatgaccatcaagttgaaggaagaa
ttgcttatgaactcgttcaagaccatcgacggccgaggcgtcagcgtccacatttccggt
gggccatgcattactgttcagtacgtgaccaacatcataatccatgggatcaacattcat
gattgcaagagaggagggaatgcttatgtgagggactctcctacccattacggctggagg
acgatatcggacggggacggggtatcgattttcggaggcagccatgtttgggtggaccat
tgctctttgtctaactgcaacgatgggctgatcgacgccattcatggatccaccgccatc
accatttctaacaattacttgacccatcataacaaggtcatgctattgggacatagtgac
acttacaaacaagataagaacatgcaagtcaccattgcctttaatcactttggagaaggc
cttgtacaaagaatgcctagatgtaggcatggatactttcacgtggtgaacaatgattac
acgcactgggaaatgtatgcaatcggtggcagtgctgatcctacaatcaacagccaaggc
aatagatttcttgcaccaaatgatgcagacaacaaagaggtgacaaaacatgaggatgcg
ccgcaaagtcaatggaagcattggaattggagatcagaaggggatttgatgttgaatgga
gccttcttcaccgcatccggaaccggggcttcttcaagttatgccaaggcgtcgagcttg
ggtgcgaggccctcatcactggtgagctcactcacagcaggagcgggtgcactcgtttgc
aagaaggggtcgcattgctag
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