Gossypium hirsutum (upland cotton): 107909965
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Entry
107909965 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107909965
09122 Translation
03013 Nucleocytoplasmic transport
107909965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107909965
03041 Spliceosome [BR:
ghi03041
]
107909965
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
107909965
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107909965
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107909965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
Motif
Other DBs
NCBI-GeneID:
107909965
NCBI-ProteinID:
XP_040945300
LinkDB
All DBs
Position
D02:complement(49740687..49761013)
Genome browser
AA seq
1844 aa
AA seq
DB search
MSLPPIECIYVTEEIIRESKNGNSNFSFSSPVPMLRFLYELSWAMVRGELPFQKCKAVLD
AVEFTERVSEDEFASCFADIVTQMAQDFTMAGECRINLIKLAKWLVESSLVPLRLFQERS
EEEFLSEAEMIKIKAPDLKVKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRGSEDS
TQNSSTARIGIIKSLIGHFDLDPNRVFDIVLECYELQPDNNAFLQLIPIFPKSHASQILG
FKFQFYQRMEVNTPTPFGLYKLTALLVKEEFIDLDSIYAHLLPKDDEAFEHYNGFSAKRL
DEANKIGKINLAAIGKDLMEDEKQGDVRIDLFAALDMENEAVAERSPELENSQTLGLLTG
FLLVDDWYHAHILFDRLSPLNPVAHVRICKGLFRLIEKSISSAYDIVRQTHLQSFVSPLG
IDNVDTRGTTVSNSFIDLPKELFQMLATVGPHLYRDTLLLQKVCRVLRSYYLSALELVTN
ADGASNGEMVTTGHRNSRLHLKEARPRVEETLGACLLPSLQLVPANPAVGQEIWEVMNLL
PYEVRYRLYGEWEKDDERNPTILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYKDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQFTENL
TEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLRDSLLPKDEPKLAIPLLLLIAQH
RSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPAAAYAQLIPSLDDLVHMYHL
DPEVAFLIYRPVMRLFKCQGSHDVFWPLDANGTADITVACSESESKDDSSRVILDLGPPR
KPTMWSELLDTVKTMLPSKAWNSLSPDLYATFWGXTLYDLYVPRNVYESEIAKQHAALKA
LEELPDNSSSAINKRKKDKERIQEALDRLTSELHKHEENVASVRRRLTREKDRWLSSCPD
TLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMI
CCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFI
KVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKND
EREDLKVLATGVAAALAARKSSWVTDEEFGMGYLELKPVPPIASKSVAGNTVAAQNGSSV
NVSHNEAASGRTVALGTQQSDVNLVKDQVSRTKPDGRLERAENAPLGKSDLKTKGGTSAN
GSDAALSVTLAASQAGIAKSHENQKQPDDSSNKLDKHAAKTPAKNSAESELKASSKRSVP
VGSLTKTQKQDPGKDDGKSGKAVGRTSAISVNDRDVPSHTEGRQGGTTNVSSAITSNGKD
DSSEVPDASRPSSRIVHSPKHDSSAAASKSSDKLQKRTSPVEETDRLSKRRKGDVEVKDL
DGEVRVSDRERSTDPRSADFDKPGTDEVTSYRTGDKPLDRSKDKGSERNDRDYRDRLERS
EKSRADDILIEKSRDRSIERHGRECSVERSIDRNLDRLGDKAKDERSKDERSKVRYADTS
VEKSHADDRFHGQSLPPPPPLPPHMVPQSVNATGRRDDDPDRRFGSTRHTQRLSPRHEEK
ERRRSEENLLVSQDDGKRRREDDFRERKREEREGLSLKVEERERDRERDREKANVVKEDD
VDATGAKRRKLKREHLPSEPGEYSPVAPPPPPLSIGMSQSYDGRERDRKGTMMQRGGYLE
EPGMRIHGKEATGKMARRDPDPLYDREWDDEKRQRPEQKRRHRK
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccctcctatagagtgtatatacgtgacagaggaaatcattcgcgagagcaaa
aatggaaactctaacttctcattctcttcacctgttcccatgcttcgctttctctacgag
ctctcctgggccatggtgcgcggggaattgccattccagaagtgtaaagcggtcttggat
gccgtagagtttacagagagagtgtcggaggatgagtttgcctcctgctttgctgatatc
gtcacgcaaatggctcaagactttacaatggccggagaatgccgcattaatttgataaaa
ttggcaaagtggctggtggagtcttcattagttccattgaggcttttccaggagcggagc
gaagaagagttcctatcagaggctgagatgatcaagataaaggctccagatttgaaggtt
aaagaggtcagggtaaatacacgtcttctttatcaacaaacaaaatttaacctccttcga
gaagagagtgagggctatgctaagctggttactctcctttgtcgaggttctgaagattca
actcaaaattcatcaacagcaagaataggcatcatcaagtcattaattgggcattttgat
ctggaccccaaccgtgtttttgacattgtattggagtgttatgaacttcagccggataat
aatgcttttttgcaattgattcccatctttccaaagtctcatgcttcacaaattctcggt
tttaagtttcaattctatcagcgcatggaagtaaatactcctaccccatttgggctctat
aagcttacagcattgctagtgaaggaagagtttattgatcttgatagcatctatgctcat
ttacttcccaaggatgatgaggcatttgagcattataatggtttctccgcaaaacggctt
gatgaggctaacaaaattggaaaaataaatcttgctgctattggtaaggatctcatggag
gatgagaaacaaggagatgtaaggatagacctttttgctgctttagatatggaaaatgag
gctgtcgctgaaagatctccagagcttgagaatagtcaaactttaggcttgcttactggt
ttccttttggtagatgattggtaccatgcccatatcctctttgatcgcctttcacctctt
aatccagtggcacatgttcgaatctgcaaggggttatttaggctcattgaaaagtcaatc
tcttcagcatatgatattgttcgccagacacatctccaaagctttgtgtctcccttgggt
attgataacgtggatacaagaggtacaacggtcagtaactcctttattgatcttcctaag
gaactctttcagatgctggctactgttggacctcatctttaccgtgatacactactgttg
cagaaggtatgtagagttttgagaagttattatttatctgcccttgagcttgtaactaat
gctgatggagcctcaaatggggaaatggttaccactggacatcgaaattctcgtcttcac
ttgaaggaagcaagaccaagggtagaggaaactttaggagcgtgtctacttccttctttg
caacttgtacctgcaaatccagctgttgggcaagagatttgggaagtaatgaatctcctt
ccctatgaggtgcgatatcggttatatggcgagtgggaaaaggatgatgagcggaatcct
acaatattagctgcaagacaaactgccaagctggacacaaggaggattttgaaacggttg
gctaaggaaaatttgaagcagttaggtcggatggttgctaaacttgctcatgctaatcca
atgactgtactgcgaaccattgttcaccagattgaggcatacaaggatatgattactccc
gttgttgatgcattcaagtatttgactcagcttgagtatgacattttggaatatgttgtg
attgaacgacttgcacaaggaggacgagataaactaaaggatgatggtctaaatttgtca
gattggcttcaatctttggcatcattttggggacacctgtgtaagaaatacccatcaatg
gaactgagaggtcttttccagtacctggttaatcagttaaaaaagggccaaggaattgaa
cttgttctcctgcaggagcttattcaacaaatggcaaatgtacaattcacagaaaatctg
accgaggagcagttggatgccatggctggaagtgagactcttcgatatcaagccacttca
tttggtgtaactcgaaataataaggcattgatcaaatccaccaataggctcagagattcg
ttgcttccaaaggatgaacctaagttggctattccacttttgttgcttatagcgcaacat
cgttctttggttgtcataaatgcagatgctccttacattaagatggtcagtgagcagttt
gacagatgccatgggactcttcttcagtatgtagaattcctatgtagtgcagtgacacca
gctgctgcttatgctcaattaattccctcacttgatgatcttgttcatatgtaccacctt
gatcctgaggttgcatttttgatatatcgtcctgtgatgaggctcttcaagtgtcaaggc
agtcatgatgttttctggcctttagatgccaatggaactgcagatattactgtggcatgc
tcagagtctgaaagtaaggatgattctagccgagtgatactggacttgggtcctcctcgg
aagcccacaatgtggtctgaacttcttgacactgttaaaaccatgttgccttctaaagcc
tggaatagtctctctcctgacctctatgccactttttggggcnttacactgtatgatctt
tatgttcctagaaatgtttatgagtctgaaattgcaaagcagcatgctgctcttaaggct
cttgaagagcttcccgataattctagttcagcaattaacaaaaggaaaaaagacaaggaa
agaattcaagaagccttagatcgtctaactagtgaacttcataagcacgaggaaaatgtt
gcatctgtccgtaggcgacttactcgtgaaaaggacaggtggttgagttcctgccctgat
actcttaagattaacatggagttcctccagcgttgtatatttcctcgatgtaccttcagc
atgccagatgcggtctattgtgcaatgtttgtccatactctccattctctgggcacacct
tttttcaacacagtgaatcatattgatgttctgatatgcaaaaccttgcaacccatgata
tgctgttgcactgagtatgaagcaggaagactaggaaggtttctgtatgaaacactaaag
attgcatactactggaagagtgacgaatccatctatgagcgggagtgtggaaatatgcca
ggctttgctgtgtattatagatatccaaatagccagcgtgttacatacggacagttcata
aaggtacattggaaatggagccaaagaatcacaaggttattgatccaatgtttggaatca
accgagtacatggagattcgtaatgctttaataatgctgacaaaaatttctagtgttttc
cctgttaccagaaagagtgggattaacctagaaaaaagggttgcgaaaattaaaaatgat
gaaagagaggatctcaaggtgttggcaacaggtgttgctgctgcattggctgctagaaag
tcttcatgggttactgatgaggaatttggaatgggatatcttgagctaaagcctgtacca
ccaattgcttcaaaatctgttgctggtaacacagttgctgcacaaaatggttcatcagtt
aatgtttcccacaatgaggctgctagtggcaggacagttgcccttggaactcaacagtcg
gatgtgaatttggtcaaggaccaggtttcaagaacaaaacctgatgggcgattggaaaga
gcagaaaatgcccctcttggtaaatctgatttgaaaacaaaaggtggtacatcagccaat
ggctctgatgctgcgttatctgttacattagctgcttcacaagccggaatagcaaaatca
catgaaaatcagaaacagccagatgattcttctaataaattggataagcatgcagctaaa
actcctgcgaaaaactctgctgaatcagagttaaaggcctcttccaaacgctctgtccct
gttggatctctaacaaagacacagaagcaagatcctggaaaagatgatggcaagtcgggg
aaagctgttggaagaacttctgcaatctctgtcaatgacagagatgttccctctcataca
gagggtagacaaggtgggactacaaatgtttcttcagctatcacttccaatgggaaagat
gatagctctgaagtaccagatgcatcgaggccatcttctcgaattgttcattctcccaag
catgatagttctgctgctgcttctaagtccagtgataagctgcaaaagagaactagtcct
gtggaagagactgatagattaagcaagcgccgtaaaggcgatgttgaagtgaaagatctg
gatggtgaagttcgagtatctgacagggagaggtccactgaccctcgatcggcagatttt
gataagcctggaactgatgaagtaacaagctacaggactggggataagcctttggataga
tcaaaagataagggaagtgagagaaatgatagggattacagagatagattggagcgctct
gaaaagtcccgggcagatgatattttgattgagaagtcgagagatagatcaatagagaga
cacggaagagagtgttctgttgagagaagcattgataggaatttggatagacttggtgat
aaagctaaggatgagcgcagcaaagacgaaagaagtaaagtacgatatgctgatacatcc
gtagaaaagtctcatgctgatgaccggtttcatgggcaaagcttgccgccaccaccacct
ttacctcctcatatggtcccacaatctgttaatgctactggtagaagggatgatgatcct
gacagaaggtttggtagtacaagacacactcaaagactctctccaagacatgaagagaag
gagcggagacggtcagaagaaaatttgttggtttcccaggatgatggaaagcgcagaaga
gaggatgactttcgagagagaaagcgagaggaaagagagggattgtcattgaaggtggaa
gagagggaaagagacagagagagggacagagagaaagcaaatgttgtgaaagaggatgat
gttgatgctactggtgccaaaaggcggaaactcaagagagagcatttgccatcagagccc
ggggaatattctccagttgcccctcctcccccacctctttccattggtatgtcacaatca
tatgatggaagagagagagaccgaaagggtaccatgatgcagcgtgggggttacttggag
gaaccagggatgaggattcatgggaaagaggcaaccggcaagatggctcgtcgagaccca
gacccattgtatgatcgggaatgggacgatgagaaaagacagagacctgagcagaagcgg
aggcatcggaagtaa
DBGET
integrated database retrieval system
