Gossypium hirsutum (upland cotton): 107910407
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Entry
107910407 CDS
T04793
Name
(RefSeq) F-box protein SKP2A
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107910407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107910407
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107910407
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
F-box-like
F-box
LRR_At5g56370
LRR_Zer-1
LRR_At1g61320_AtMIF1
F-box_4
RsmF_methylt_CI
LRR_8
Motif
Other DBs
NCBI-GeneID:
107910407
NCBI-ProteinID:
XP_016693725
UniProt:
A0A1U8JU07
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Position
D02:complement(11459079..11462226)
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AA seq
372 aa
AA seq
DB search
MIGEAKVGNEDLNLCFEKLMMVAAGNSEGVKMNGVGITEWKDIPVELLLRIVSLLDDQTA
IVASSVCSGWRDAVCLGLTQLCLSWCRKNMNNLVLSLAPKFTRLQTLILRQENPQLEDNA
VETISKFCHDLQDLDLSKSFKLSDRSLYALAHGCPNLKKLNISGCTSFSDEALAYLTNFC
RKLKILNLCGCVKAATDHALQAIGRNCNMLQSLNLGWCDNVGDLGVMSLAYGCHDLRCLD
LCGCVRITDDSVIALANECLHLRSLGLYYCRNITDRAMYSLAHSRVKNKGLTWESSMKGR
YEDDGLKSLNISQCTALTPSAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCACAVQA
HRTFNTIFHTAH
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgattggtgaagcaaaagttgggaatgaagacttgaacttatgctttgagaagctgatg
atggttgcagctgggaatagtgagggagttaagatgaatggtgtggggatcactgagtgg
aaagatatccctgtggagctgctgttgagaatcgtttcactactcgatgatcagactgct
atcgttgcttccagtgtctgtagtgggtggagggatgccgtttgcttgggtctcacacaa
ctctgtctctcatggtgtagaaagaacatgaacaatttggttctatctcttgcacctaaa
ttcaccagactgcaaactctgatattgcgccaagagaatccacagctcgaggacaatgct
gtcgagactatttcaaagttttgtcacgatctgcaggacctggacctcagtaaaagtttc
aagcttagtgatcgctccttgtatgcattggctcacggttgtcctaaccttaaaaagctt
aacatcagcggctgcacatcattcagcgacgaagctctcgcgtatttgactaatttttgt
cgaaaactaaaaatattaaatctgtgcggatgtgttaaagctgcaactgaccatgcactg
caggctattggacgaaactgcaatatgttgcaatctttgaatctgggatggtgtgacaat
gttggcgatctcggagtcatgagtttagcatatggatgccatgatctccgatgcctggac
ctgtgtggttgtgttcgtataacagatgatagcgtgattgctttagcaaatgagtgcctc
catttgaggtcgctcggactgtactattgccgtaacatcacggacagggcgatgtactca
ttggctcacagccgagtgaagaacaaaggtttgacgtgggagtcgtcgatgaaaggtaga
tatgaagatgatggtctaaaaagtctgaatataagccagtgtacggcactgactccatca
gcagttcaggctttatgtgacacattccctgcacttcatacctgctctggaaggcactcc
cttgttatgagtggttgcttgaacttaacctccgtgcattgtgcttgtgcggttcaagct
caccggaccttcaacactattttccacacagctcattga
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