KEGG   Gossypium hirsutum (upland cotton): 107910416
Entry
107910416         CDS       T04793                                 
Name
(RefSeq) small RNA degrading nuclease 5
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    107910416
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ghi03009]
    107910416
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    107910416
SSDB
Motif
Pfam: RNase_T
Other DBs
NCBI-GeneID: 107910416
NCBI-ProteinID: XP_016693735
UniProt: A0A1U8JU16
LinkDB
Position
D02:11331489..11336503
AA seq 564 aa
MASLKEKSEEAIPEEEKKESSNYFDIYGPQAKAELVFKTPEADSTLNLQDVQGLVTWVLA
DGFMPSWVFIKNKPLIPKVVMLYVPGLDAALYIAQSMKLSGFKQSCGNPRALLALSCVSD
GMQTIDALLTCKVKRKRNVIDSARDVSQSAEQETSISSMDSAEILKDIPFPISYYMLTAK
ELEDNGFCYDQPGFLPTRPAPDGSSPYEMLALDCEMCITSEGFELTRVTLVDIKGQVVLD
KLVNPSNPITDYNTRFSGITYEMLSGVTTTLQNVQEDFLMLVHKDTILVGHSLENDLLAL
KISHDLIIDTSVLYKHPRGGSYKSALRVLAKRFLSREIQQSGSGHDSIEDARAAMDLALL
KIRNGPDFGSPPSFMRRKLLTLLGECGKTSSFIDDISIVKRYASESSHAIPVCSDDEALL
KARKEVKNDRVHFVWTQFSELNSYFRKQAEDDVKLNGKLAEMMSLLTCDKKPAKRKGVKY
NISTELKEILTRIDARVRSLHTALPTNSMFIICTGHGDIAIVHRLRKMLTEQSETMIPRE
KLIKVLEELQAQAEVALCFVGMKH
NT seq 1695 nt   +upstreamnt  +downstreamnt
atggcgtctctaaaggaaaagagtgaagaggcaattccagaggaggaaaagaaggagagc
tctaattattttgatatttatggacctcaagcaaaagcagaacttgttttcaagacgcca
gaagctgacagtactttgaatttgcaagatgttcaaggacttgttacctgggttcttgcc
gatggattcatgccttcctgggtctttattaagaataagccgctgataccgaaagttgtt
atgctttatgtccctggcttggatgcagctttgtacatagctcaatccatgaaactttct
ggttttaaacaaagttgtggcaatcctcgggcacttttagcacttagttgtgtatcagat
gggatgcagacaatagacgcactcctaacgtgcaaagtgaagagaaagagaaatgtaatt
gattcagcaagggatgtaagccaatcagctgagcaagaaacatccatctcttcaatggac
tctgcagaaatcttgaaagacattcctttccccatttcatattatatgcttacagcaaag
gaactagaagacaatggattttgttatgatcaaccaggttttcttcctactcgtcctgct
cctgatggatcttctccttatgaaatgttggcacttgactgtgaaatgtgtataacaagt
gagggttttgagcttacaagagtgaccctggttgatattaaaggacaggttgtactggat
aaattggttaacccatcaaaccctatcaccgattacaacacaaggtttagtggaatcaca
tacgagatgttgagtggagtgactacaactcttcaaaatgttcaggaagattttctgatg
ctggttcacaaagataccatcttagtcgggcactccttggagaatgacttattagctttg
aagatttctcatgatctgataattgatacatctgtattatacaaacaccctcgcggtgga
tcttataaaagtgctcttcgagttcttgcgaagagatttctttctcgggaaatacagcag
tcggggagtggacatgatagcattgaagatgcaagagctgctatggatttggctctgtta
aagattagaaatggacctgattttggttcgccaccatcctttatgcgtaggaagctcctt
acacttctgggtgagtgtggcaagacctcctctttcattgatgatatttccatagtgaag
cgatatgcttctgagtcatcccatgcaatcccagtttgctctgatgatgaagcactttta
aaggctagaaaagaggtcaagaatgaccgtgttcactttgtctggacacagttttcagaa
ttgaattcctatttcagaaaacaagctgaggatgacgtaaagttgaatggaaagcttgcg
gaaatgatgtcattgcttacatgtgataagaaacctgccaaacgcaaaggagtaaaatac
aatatttcaactgagctaaaggaaattttaacacgcatcgacgctagggttcgtagtctc
cacactgcattacccactaactcgatgtttataatatgcaccggacatggggacatagcc
attgttcatagattaaggaaaatgctgacagagcaaagtgaaacaatgattccacgtgag
aaacttattaaggttttggaagagctgcaggcccaagctgaggtagctttatgttttgtt
ggtatgaagcattag

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