Gossypium hirsutum (upland cotton): 107910416
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Entry
107910416 CDS
T04793
Name
(RefSeq) small RNA degrading nuclease 5
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107910416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107910416
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
RNases
107910416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-GeneID:
107910416
NCBI-ProteinID:
XP_016693735
UniProt:
A0A1U8JU16
LinkDB
All DBs
Position
D02:11331489..11336503
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AA seq
564 aa
AA seq
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MASLKEKSEEAIPEEEKKESSNYFDIYGPQAKAELVFKTPEADSTLNLQDVQGLVTWVLA
DGFMPSWVFIKNKPLIPKVVMLYVPGLDAALYIAQSMKLSGFKQSCGNPRALLALSCVSD
GMQTIDALLTCKVKRKRNVIDSARDVSQSAEQETSISSMDSAEILKDIPFPISYYMLTAK
ELEDNGFCYDQPGFLPTRPAPDGSSPYEMLALDCEMCITSEGFELTRVTLVDIKGQVVLD
KLVNPSNPITDYNTRFSGITYEMLSGVTTTLQNVQEDFLMLVHKDTILVGHSLENDLLAL
KISHDLIIDTSVLYKHPRGGSYKSALRVLAKRFLSREIQQSGSGHDSIEDARAAMDLALL
KIRNGPDFGSPPSFMRRKLLTLLGECGKTSSFIDDISIVKRYASESSHAIPVCSDDEALL
KARKEVKNDRVHFVWTQFSELNSYFRKQAEDDVKLNGKLAEMMSLLTCDKKPAKRKGVKY
NISTELKEILTRIDARVRSLHTALPTNSMFIICTGHGDIAIVHRLRKMLTEQSETMIPRE
KLIKVLEELQAQAEVALCFVGMKH
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctaaaggaaaagagtgaagaggcaattccagaggaggaaaagaaggagagc
tctaattattttgatatttatggacctcaagcaaaagcagaacttgttttcaagacgcca
gaagctgacagtactttgaatttgcaagatgttcaaggacttgttacctgggttcttgcc
gatggattcatgccttcctgggtctttattaagaataagccgctgataccgaaagttgtt
atgctttatgtccctggcttggatgcagctttgtacatagctcaatccatgaaactttct
ggttttaaacaaagttgtggcaatcctcgggcacttttagcacttagttgtgtatcagat
gggatgcagacaatagacgcactcctaacgtgcaaagtgaagagaaagagaaatgtaatt
gattcagcaagggatgtaagccaatcagctgagcaagaaacatccatctcttcaatggac
tctgcagaaatcttgaaagacattcctttccccatttcatattatatgcttacagcaaag
gaactagaagacaatggattttgttatgatcaaccaggttttcttcctactcgtcctgct
cctgatggatcttctccttatgaaatgttggcacttgactgtgaaatgtgtataacaagt
gagggttttgagcttacaagagtgaccctggttgatattaaaggacaggttgtactggat
aaattggttaacccatcaaaccctatcaccgattacaacacaaggtttagtggaatcaca
tacgagatgttgagtggagtgactacaactcttcaaaatgttcaggaagattttctgatg
ctggttcacaaagataccatcttagtcgggcactccttggagaatgacttattagctttg
aagatttctcatgatctgataattgatacatctgtattatacaaacaccctcgcggtgga
tcttataaaagtgctcttcgagttcttgcgaagagatttctttctcgggaaatacagcag
tcggggagtggacatgatagcattgaagatgcaagagctgctatggatttggctctgtta
aagattagaaatggacctgattttggttcgccaccatcctttatgcgtaggaagctcctt
acacttctgggtgagtgtggcaagacctcctctttcattgatgatatttccatagtgaag
cgatatgcttctgagtcatcccatgcaatcccagtttgctctgatgatgaagcactttta
aaggctagaaaagaggtcaagaatgaccgtgttcactttgtctggacacagttttcagaa
ttgaattcctatttcagaaaacaagctgaggatgacgtaaagttgaatggaaagcttgcg
gaaatgatgtcattgcttacatgtgataagaaacctgccaaacgcaaaggagtaaaatac
aatatttcaactgagctaaaggaaattttaacacgcatcgacgctagggttcgtagtctc
cacactgcattacccactaactcgatgtttataatatgcaccggacatggggacatagcc
attgttcatagattaaggaaaatgctgacagagcaaagtgaaacaatgattccacgtgag
aaacttattaaggttttggaagagctgcaggcccaagctgaggtagctttatgttttgtt
ggtatgaagcattag
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