Gossypium hirsutum (upland cotton): 107910424
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Entry
107910424 CDS
T04793
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107910424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107910424
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107910424
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107910424
RNA polymerase I system
107910424
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
107910424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW2_Spt5
KOW
KOW4_SPT5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
ProQ_C
DUF4438
KOW6_SPT5
PSP1
Motif
Other DBs
NCBI-GeneID:
107910424
NCBI-ProteinID:
XP_016693751
UniProt:
A0A1U8JTZ8
LinkDB
All DBs
Position
D02:complement(11114197..11122376)
Genome browser
AA seq
1039 aa
AA seq
DB search
MARRRDEEDDDVDDEEYEDEEDQLVDDEDYEEDEDVGRGRGGSSRKRRRSDFIDDVAEED
DEEDEYEDDDDEVYGGGSKKHSKAPRVGSQFFDLEAQVDSDEEEEEEEGEDDFIVETGAD
LPDEDVGRRMHRRPLPMREDEQEDVEALERSIQARYARSSHTEYDEETTDVEQQALLPSV
RDPKLWMVKCAIGRERETAVCLMQKFIDKGVELQIRSVIALDHLKNYIYIEADKEAHVRE
AVKGLRNIFPAKIMLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAQVVDVDNV
RQRVTVKLIPRIDLQALANKLEGREVAKKKAFVLPPRLLNVDEARELHIRVERRRDPVTG
DYFENIDGMLFKDGFLYKTVSMKSISAQNIKPTFDELEKFRAPSTNGVEMVGLSTLFANR
KKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKYFEPG
NHVKVVSGTKEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGITKIGEYE
LHDLVLLDNNSFGVIIRVESEAFQVLKGVPERPEVSLVKLREIKCKVDKKFNVQERYRNT
VAVKDVVRILEGPCKGKQGPVEHIYKGVLFVYDRHHLEHAGFICAKADSCCIVGGSRSNG
DRNGGSLSRFGGFKAPSRVPPSPRRFSRGGPPFDSGGRHRGGRGGHDALVGTSVKIRQGP
YKGYRGRVVDIKGQSVRVELESQMKVVTVDRNSISDNVVISTPHRESSRYGMGSETPMHP
SRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEEGNPASWGTSPQY
QPGSPPSRAYEAPTPGSGWASSPGGSYSEAGIPRDSSSAYANAPSPYMPSTPSGQPMTRS
SGSYIPGTPGGQPMTPGTGLNMMSPVIGADNEGPWFMPDILVNVRKSGDESLGVIQEVLS
DGSCKVALGPNGSGDTVIAMPSEMEVVPPRKSDKIKIMGGSLRGVTGKLIGVDGTDGIVR
IDDSLDVKILDLVILAKLH
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcgagacgaagagacgaggaagatgatgatgttgatgatgaagagtacgaagatgag
gaggaccagttagtggacgatgaggattacgaggaggacgaagacgtagggagaggtcga
ggtggttcaagcaggaagcggcgcagatctgatttcatcgatgacgtggcggaggaggat
gatgaggaagatgaatatgaagatgacgacgatgaggtttatgggggcggtagcaaaaag
catagcaaggctccgcgtgttggctctcagttttttgatcttgaagcacaggtggatagc
gatgaggaagaggaagaagaggagggcgaagacgacttcatagttgagactggagctgat
cttcctgatgaagatgttggtagaaggatgcaccgtcgcccattaccaatgcgggaggat
gaacaagaagatgttgaagctcttgagagaagcattcaggctaggtatgctagatcaagt
cacacagaatatgatgaggagacaactgatgtggaacagcaagcacttttgccatcagta
agagatccaaagctgtggatggtgaaatgtgcgattggtcgtgaacgagagaccgctgtt
tgcctcatgcagaagttcattgataaaggagttgaattgcagatcaggtctgttattgct
cttgatcacctcaaaaattatatttatattgaagcagacaaggaagcccatgtacgagag
gctgtcaaaggtctacgtaatatatttccagcaaagattatgcttgttccaataagagaa
atgactgatgttttatcagttgaaagtaaagcaattgatctttcaagagatacctgggtc
agaatgaagattgggacatataagggtgatcttgctcaagtagttgatgtggataacgtg
aggcagagagtcactgtgaaattgatccctaggattgacttacaggctcttgcaaataaa
ttggaaggcagagaggttgcaaagaagaaagcctttgtccttcctcctcgtttattgaat
gttgatgaggctagggaacttcatattcgtgtagaacgcaggcgagatccggttactggt
gattactttgagaatattgatggcatgcttttcaaagatggattcttgtataaaacagtg
tccatgaaatcaattagtgctcaaaacataaaaccgacttttgatgaacttgaaaagttc
cgggcacctagcacgaatggagttgaaatggttggtttgtcaactttgttcgcaaacagg
aagaaaggccacttcatgaagggtgacgccgtgattgttgtcaagggggatttgaaaaat
ttaaagggatgggttgaaaaggttgaggaagagaatgtccatatcagaccagaaatgaaa
ggccttccaaaaactcttgctgttaacgaaaaagagctgtgtaagtactttgagcctggg
aatcatgtgaaggttgtgtctgggacaaaggaaggtgcaactggcatggttgttaaggtg
gagcagcatgtgctcatcattttatcggatacgaccaaggaacatattcgtgtttttgct
gatgatgttgttgagagctctgaagtgactactggtattacaaaaattggagagtatgag
cttcatgatcttgtgctactagataacaatagctttggtgtaattatacgtgtagaaagc
gaagcgtttcaggttcttaagggtgtcccagaaagaccagaggtttctcttgtcaaattg
agggaaatcaaatgtaaggttgataagaaatttaatgtgcaagaaagatataggaatact
gttgctgtgaaagatgtagttaggattcttgaaggcccttgtaaagggaaacaaggtcct
gtagagcacatatataaaggagtcctgttcgtgtatgatcggcatcaccttgaacatgct
ggctttatatgtgctaaagctgattcttgttgtatagtgggaggatcacgttccaatggt
gacagaaatggtggttctctctcaagatttggtggcttcaaggctccatcccgtgtacca
ccttcaccgaggagattttctaggggaggtcctccatttgattctggaggaaggcacaga
ggcggaagaggggggcatgatgctttggttggtacttctgtgaaaattcgccagggtcct
tataagggttaccgtggacgtgttgtagatattaaaggtcaatcagttcgagttgagctg
gagtctcaaatgaaggttgttacagttgatcgcaattccatatctgataacgtggttatt
tcaacaccccaccgtgagtcatcccggtatggtatgggaagtgaaactcctatgcaccct
tcacgaactccattacatccatacatgactcctatgagagatcctggagcaacacctatc
catgatggcatgagaacacctatgcgtgacagggcctggaatccttatgcacctatgagt
ccacccagggataattgggaagaaggaaaccctgcctcttggggaaccagtcctcagtat
cagccaggaagtcctccttcaagggcatatgaagcacctactcctggttcaggttgggct
agttctcctggcggtagttacagtgaggctggaataccgagagatagcagttcagcttat
gccaacgctccaagtccttatatgccatcaactcctagtgggcagcctatgacacgaagc
tcaggatcctatattccgggtacacctggagggcagccgatgacaccaggaactggtctt
aatatgatgtctccagtaataggtgctgacaatgaaggaccttggttcatgccagatatt
ttggtcaacgtgcgcaaatctggagatgagtctcttggagtcatccaagaagtgctttcg
gatgggtcctgtaaggtggctctgggtccaaatggcagcggtgatacagtaattgcgatg
cctagtgagatggaggtagtgccaccgaggaaatcggacaagatcaaaatcatgggcggc
tcacttcgcggtgtaactggtaagttaattggcgttgatggtacggatggcattgttagg
atagatgacagtcttgacgtgaagatattagacttggttatactagcaaaattacactga
DBGET
integrated database retrieval system
