Gossypium hirsutum (upland cotton): 107910474
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Entry
107910474 CDS
T04793
Name
(RefSeq) protein PIGMENT DEFECTIVE 338, chloroplastic isoform X1
KO
K02945
small subunit ribosomal protein S1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
107910474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
ghi03011
]
107910474
Ribosome [BR:
ghi03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
107910474
Bacteria
107910474
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
S1_RRP5
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
107910474
NCBI-ProteinID:
XP_016693813
UniProt:
A0A1U8JYJ3
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All DBs
Position
A02:complement(10443742..10448936)
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AA seq
514 aa
AA seq
DB search
MQTLLQPCKSLSFLNFSSQYFAFNGAPKWQYSVKRTCNSITAAGTPKALSFPRKYTFLRS
TQIVLCSQNDTFDEFSSTQLPERFENDSGIEENEELELLNKPSPAPVNNGFVSDVDKESE
KPDKEEVLEPFLKFFRPSEPLQVEGGGELEDSEEKIDEVKKVGVEYYEPKPGDLVVGVVV
SGNENKLDVNVGADLLGTMLTKDVLPLYDKEMDYLMCDLENKAEEFMFYGKMGIVKDDDA
MSGGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRQLFRRIAWHRVRQIKHLNEPIEVK
FTEWNTGGLLTRIEGLRAFLPKAELMKRVNNFSELKGYVGRRMHVKVSRINEANNDLILS
EREAWEMMHLRDGTLVEGTVVKILPYGAQVRIADSNRSGLLHISNMSKTRITSVAELLKE
DEKVKVLVVKSLFPDKISLSTAELESEPGLFILNKERVFSEAEEMAKKYRQSLPAVYAPR
NIEPLPADALSFENEESLYANWKWFKFERENESS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccctgcttcaaccctgtaagtctttatcctttctcaatttttcgagtcaatac
tttgcttttaatggtgcccccaaatggcagtactctgttaaaagaacttgtaactccatt
accgctgctgggacaccaaaagctttgtcttttccgaggaaatatacgtttttgagaagt
acccagattgtgctttgctctcaaaatgatacttttgatgagttttcaagcacccagttg
cctgaaaggtttgaaaacgatagtggaattgaagaaaatgaggagcttgaattgcttaat
aagcctagtccagcacctgtgaataatgggtttgtatctgatgttgataaagagtctgaa
aaacctgataaagaagaggttttggagccttttttgaaattttttaggcctagcgaacca
ttgcaagtagaagggggaggtgaattagaagattctgaggagaaaattgatgaagtgaag
aaggttggtgtcgagtactatgagccaaaacctggtgacttagtggttggtgttgttgtt
tctggtaatgagaataagcttgatgtgaatgttggggctgacttgttgggtacaatgttg
actaaagatgtgttgcctttgtatgataaagagatggattatttgatgtgtgatctggaa
aataaagctgaggaatttatgttttatgggaagatgggaattgttaaggatgatgatgcg
atgagtggggggccgggtcctggaagaccagtggttgagactggaactgtgctttttgct
gaggttcttggaagaacacttagtggtcggcctttgctctcaactagacagctcttcagg
aggattgcttggcatcgagtgaggcagataaaacacctgaatgaacctatagaggttaaa
tttacagagtggaatacaggtggcctgctgacaagaattgagggcttgcgagctttcctt
ccaaaagctgagttgatgaagagagtaaataacttctctgagttgaaaggatatgtgggc
cgcagaatgcatgtgaaagttagtcgaataaatgaggctaacaatgatttaatattgagc
gagagagaagcttgggaaatgatgcatcttcgagatggaacacttgtagaaggaactgtt
gtaaaaattttaccgtatggagcccaagtaagaatagcggattccaatagaagtgggttg
cttcatatctcaaatatgagcaaaactcgaattacttctgttgctgaattgcttaaagag
gatgagaaggtcaaggttcttgttgtgaagtcactctttcctgacaaaatatctctcagt
actgctgaacttgaaagtgaacctggcctctttatattaaacaaagagagggtattttct
gaggctgaagagatggcaaagaagtacaggcaaagtctacctgcagtttatgcaccccgg
aatatcgaacctcttccagctgatgctttatcttttgagaacgaagaaagtctgtatgca
aattggaagtggttcaaatttgaaagagagaatgaatcaagttga
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