Gossypium hirsutum (upland cotton): 107910516
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Entry
107910516 CDS
T04793
Name
(RefSeq) tRNA pseudouridine synthase A 1 isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107910516
Enzymes [BR:
ghi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
107910516
Transfer RNA biogenesis [BR:
ghi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
107910516
Prokaryotic type
107910516
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
107910516
NCBI-ProteinID:
XP_016693858
UniProt:
A0A1U8JYP5
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Position
D02:9024563..9027379
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AA seq
335 aa
AA seq
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MGSGGGALGLSSPLFANGHLSSSSNSTSLPLPVEDGNHLAMVKPSSSIVNLPHYKWRLLI
AYDGTRYAGWQFQVSPPTIQCIVEKALIQITKLERECLHFVGASRTDTGVHAWGQVAHFI
TPFNYDSLETIHAALNGLLPSGIRVREISAATPEFHARFSAKSKVYHYKIYNDTIMDPFQ
RHYVYHSVYKLNSAAMREAAKMFIRKHDFSAFVNASRNDRVPDPVKTIFRFDVIEMGPLI
QLEVEGSGFLYRQVRNMVALLIQIGKEAIPTEIVPKILATLDRRELAKYALSAPPHGLCL
VSVKYNQEHLLLPSDCPTTSFGRHHTITKCKLPFY
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggtggaggagctttaggcctttcatctcctctctttgcaaatgggcatctt
tcttcttcctccaattctacttctctacctctacctgtggaagatggtaaccacttggca
atggtgaagcccagcagcagtattgttaatcttccccactacaagtggcgtttgcttata
gcttatgacggcacccgctatgctggttggcaatttcaagtttcaccaccaactatacag
tgcattgtagaaaaggctttaattcaaataacaaagctcgagcgggagtgtctccacttt
gttggtgctagtaggacagatacgggagttcacgcctggggtcaggtggcacacttcatt
acacctttcaattatgacagcttggagaccattcacgctgctctaaacgggcttcttcct
tctggcatcagggttagagagatcagtgccgcaacacctgaatttcatgctcggttttca
gcaaaaagcaaggtttaccactacaagatttataatgacaccatcatggatccatttcag
cgtcattatgtttatcatagtgtttataaactcaattccgcagccatgagagaagcagca
aaaatgtttatcagaaagcatgacttctcagctttcgttaatgcttcacgtaatgatcga
gttccagatcctgtgaagacaatattccgctttgatgtcattgaaatggggcctcttata
cagctggaggttgaaggttccggttttttgtatcgacaagttcgaaacatggttgctttg
ttgattcaaattggaaaggaagcaattcctacagagattgttccaaagattttggcaact
ctagaccgcagagagctggccaaatacgccttgtctgccccaccgcatggcctttgcctt
gtgtctgtcaaatataatcaagagcacctactgcttccttcagattgcccgacaactagc
tttggtagacatcatactatcaccaaatgtaagcttcccttttattaa
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