Gossypium hirsutum (upland cotton): 107910540
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Entry
107910540 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107910540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107910540
03009 Ribosome biogenesis [BR:
ghi03009
]
107910540
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107910540
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107910540
Complex B
107910540
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107910540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
107910540
NCBI-ProteinID:
XP_040944171
UniProt:
A0ABM2ZND1
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All DBs
Position
D02:complement(8598069..8606432)
Genome browser
AA seq
1152 aa
AA seq
DB search
MTTAEAAAANLGPRYAPDDPTLPKPWKGLIDGTTGLLYYWNPENNVTQYERPTILPPPLP
LGPPPAVSTPKLTPISVAHSAQPNGAVAQMSQVQVVQGAKQLGQQMSQLAQQQGQIVGQQ
QGSMVAQVTDQQGAQQPGPQMGQQGQFIPQQHRPQAMQHPNQQMMSQIGQQTMQHQNSQM
AQPQGQQYAHQHLQYMAYQQSVLPQGQQSSQQLAPHGAQHQGQQYPNREDYKAAVPKKED
VDFQLGNQTGFSPAQFQQMGTSSQNHSAGTNSVQTPPAGLYSGQQQQFTGSSVNMQQPTS
MTHSQQTGTDLVQRQQGHRFQNQMGPSVIQSSMPPPGLNTGYEDKLHGRSGNDYYFSGSK
DGQMMGPQQPSLSAIPMETRMSGLPHQNVLGHGGGFNAVGGHAVHNMYGHAGPPYPNNAL
IRPPFVASADANHLSPADAYRKQHEVTATGDNVPAPFIRFEDTGFPPEILREIHSAGFSS
PTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFMLLRQRHNNPLNGPTVLVLAPTR
ELATQIQEEAIKFGRSSRVSCTCLYGGAPKANQLKELDRGADIVVATPGRLNDILEMKKI
EFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNP
VQVNIGSVDELAANKSITQYVEVVPQMEKERRLEQVLQAQERGSKVIIFCSTKRLCDQLA
RSLGRNFGAVAFHGDKSQNERDWVLSQFRTGKSPILVATDVAARGLDIKDVRVVINFDFP
TGIEDYVHRIGRTGRAGATGVSFTFFSEQDWKYAPDLIQVLERANQHVPPEVREIASRGG
PCFGKDRGGMNRFNSPSGSGGRWDSGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGFGSR
GGMRDSGFGGPGGRGDPFSGRGNRGGLGFGGPAGGHVGWGRNERSLHDQYNSFDGRGRGR
GRGRGRFDNRRGIGDRSRGRSYSRSPDMVRTWRRSRSRSRSRSGSRSWSRSSRSRSRSRS
RSWSRGRSRSYSRSPGRGRSRSHSHGRRSRSRSHSYERKDVAKRAFDSPPASNEHNLQQK
DVAKRAFDSPPPSNKQNLEQKDVAKQAFDSPGAQGNSVPENNSIEPLQTVGISELPQGEE
GAGKVHESVTEP
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgcagaagcagcagcagccaatcttggcccgcggtatgcaccggatgatcct
actcttccgaaaccttggaaggggctgattgatggaacaactggcctcctttattactgg
aaccctgagaacaatgtcacccaatacgaaaggccaaccattttgcctccacccctgcca
ctgggacctcctcctgcagtttccacacctaagctaactccaatttctgttgcccactcc
gcacaacctaatggtgcggtggcacagatgagccaggtgcaagttgtccagggtgcaaaa
cagctggggcagcaaatgagccaattagctcaacagcaaggacaaatagttgggcagcaa
cagggttcaatggtagcgcaggttacggatcagcagggtgcacaacaaccaggtccacaa
atgggacagcaggggcagtttatcccgcagcaacataggccacaggcaatgcagcaccca
aatcagcaaatgatgtctcaaattgggcagcagacaatgcagcatcaaaactcacaaatg
gcacaaccacaaggacaacaatatgcacatcagcatttgcagtatatggcatatcaacaa
agtgtgcttccacagggccaacaaagttctcagcagctcgctcctcatggtgcacaacac
cagggtcagcagtatccaaatcgagaagattataaagcagcagttccgaaaaaggaggat
gttgattttcagctagggaaccaaactgggttttctcctgctcaatttcaacagatgggc
acatcttctcagaaccactctgctggaactaattcagttcagactccaccggcaggttta
tattcaggtcaacaacagcagtttacaggctcctctgtcaatatgcaacagccaacctct
atgactcattcacagcaaactggaacagatttggttcagcggcagcagggtcataggttt
cagaatcagatgggcccatccgttatacagtctagtatgcctcctcctggtttaaatact
ggttatgaagataaactacacggcagatctggaaatgattactactttagtggtagcaaa
gatgggcaaatgatgggtccacagcagccatctctttctgctatacccatggagacaagg
atgagtggtctgccacatcaaaatgtgcttggtcatggtgggggatttaatgctgttgga
ggtcatgcggtgcataacatgtatggtcatgctggtccaccttatcccaataatgccttg
atcaggcctccatttgttgcatctgcagatgctaatcatctgtctccagctgatgcatat
cgtaagcagcatgaagtcacagcaacgggagacaacgttccagcaccattcataagattt
gaagatactggtttccctccagagatactgagagagattcattctgctggtttttcctct
cccactccaatacaagcacaaacatggcccattgcactacaaagtcgggacattgtggct
attgctaaaactggttctggtaaaacattgggctacttgattcccgctttcatgcttttg
aggcaacggcataacaaccctctgaatggcccaacagtgttggttttggctccaactcgc
gagcttgctacacaaatacaggaagaggccataaaatttggccgatcttcaagagtctct
tgcacgtgtttgtatggtggggctccaaaggctaatcaattgaaagagttagatcgagga
gctgatattgtagtggcaactcctggtcggctaaatgacatccttgaaatgaagaaaatt
gagtttggacaggtgtcactccttgttcttgatgaagcagatcgaatgcttgacatgggt
tttgagccccagattcgcaagattgttaatgagatacctcctcgcagacaaactctgatg
tacactgcaacatggcccaaggaggttagaaaaatagcaggtgacctccttgtcaatcct
gtccaggtgaacattggcagtgttgatgagcttgctgccaataagtctatcacccagtat
gttgaggttgttccccagatggagaaggagaggcgcctggagcaggttctccaagctcaa
gagcgcggttcaaaggttattattttttgctccactaagaggttgtgtgaccagcttgct
cgtagtcttggacgcaactttggagctgttgctttccatggagataaatctcaaaatgaa
agggactgggtgttgagtcagttccgaactgggaaatcccccatattggttgccactgat
gttgctgctcgtgggcttgacatcaaagatgtaagggtggttatcaattttgatttccct
accggcattgaggactatgttcaccgaattggaaggactggaagagctggtgcaactggg
gtgtcgttcacctttttctctgagcaggactggaagtatgcccctgacttgattcaagtt
ctggagagagctaaccagcatgtgcctcctgaggtgcgagagatagcttctcgtggtggg
ccttgttttgggaaggatcgaggtggaatgaatagatttaattctcctagtggtagtggt
gggcgttgggattctggaggccgtggtggaatgagggatggaggctttggtggccgtggt
ggaatgagggatgggggctttggtgggcgtggtggcatgagagatggttttggcagtcgt
ggtggtatgagggatagtggcttcggtggtcctggagggagaggtgacccattttctgga
cgtggaaaccgaggaggacttggatttggtggccctgctggtggtcatgttggttggggc
aggaatgagagaagcttgcatgatcagtataatagttttgacgggcgaggacgtggtcgt
ggacgaggacggggacgatttgataacagaagaggcattggtgatagaagtagaggcaga
agctatagccgaagtcctgacatggttcgaacttggcgccgtagccgtagccgtagccgt
agccgtagtgggagtcggagttggagtaggagtagtaggagtaggagtcgaagcagaagc
aggagctggtcacgtggtcgtagccgcagctacagccgtagtcctggtcgagggcggagc
cgaagccatagccatggccgccgcagtcgaagccgtagtcacagctatgagcggaaggat
gttgcaaagcgggcatttgattctcctcctgcttccaacgaacataacttgcaacagaag
gatgttgcgaagcgagcatttgattctcctcctccttccaacaaacagaacttagagcag
aaggatgttgcaaagcaggcatttgattcacctggtgcacaaggcaattcagtgcctgaa
aataattctatagaaccgttacaaacagtcggaatttctgagctacctcaaggagaggag
ggtgcaggcaaagtgcatgaatcagtgactgagccataa
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