Gossypium hirsutum (upland cotton): 107911089
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Entry
107911089 CDS
T04793
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107911089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107911089
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
107911089
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107911089
Multi subunit type E3
ERAD complex
107911089
LMBR1L-GP78-UBAC2 complex
107911089
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_2
CUE
zf-C3HC4_3
zf-ANAPC11
zf-C3HC4_4
zf-RING_11
zf-RING_16
zf-RING_5
FAR1_N
U-box_ZFPL1
E3_UbLigase_EDD
zf_RING_Vps8_fungal
Endonuclease_7
zf-RING_Vps41
PHD
zf-HC5HC2H
RINGv
Motif
Other DBs
NCBI-GeneID:
107911089
NCBI-ProteinID:
XP_040973244
UniProt:
A0ABM3C1S5
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All DBs
Position
A07:complement(5422530..5433061)
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AA seq
569 aa
AA seq
DB search
MGVNYLVISVFSTALSFIALQLRTEFSLLQTDGLITENFIHTENVNHVPELLLGSYSIMA
LLANFVLNVFILVILTLKTVFFGQLYSSEIRKLIERIINYVIYKGTFLPLVIPPTIIQAG
LWLIWLTVKCCLKMFQALGRDRLEHLNASPSVTPWAYFRVFSVFLFVLSFSFFWIGLSFV
LFKTLNPSMFLLLFFEPLSITFETLQAILVHGFQLLEISFHAVGNTVDCQRSKLFDLSVA
GSFWEWKGILIRNLGFFLDLATLIMAVGHYVLIWWLHGMAFHLADAVLFLNIRALLTAIV
KRIKGFIKLRMALGALHAALPDATSAEIQAYDDECAICRESMAKAKKLHCNHLFHLSCLR
SWLDQGLNEAYSCPTCRKPLFLGRTENEVNSRQINSGLDRQNMPGHTLATGVFPNQMQNP
VEGSPWRSAELDSGWLHSWPTQSVDGAGPSTGVRSVGLGRVHMMMRHLASVGDTAVEHTA
RSPWSMNLSQAAASVSSVPPNVGGRYPGNAGSLRMRTTPSTGNGNIANILAMTETVREVL
PHIPDEMIIQDLQRTNSVTDTVNNLLLQM
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgaactacttggtgatctcagtgttctctacagctttaagctttatagctctt
caacttcggacagaattttcactacttcaaactgatgggttaattactgagaattttatt
catacggaaaatgtcaaccatgtacctgagcttcttttgggttcttactccatcatggct
ctgctggcaaattttgtgctcaatgtatttattctagtcatccttactctaaagactgta
ttctttggtcagttatactcttcagaaattcggaaattaatagaacgcattatcaactat
gttatctacaaggggacctttttaccattagttattccaccaacaataatccaagcaggt
ctttggttaatctggttgactgttaaatgttgtctaaagatgtttcaagctttgggcagg
gatagacttgagcatttgaatgcatctccttctgttacaccgtgggcatacttccgtgtc
ttttcagtgtttctctttgtcctatctttcagtttcttctggatagggctgagctttgtg
ctattcaaaacactgaatccgtctatgtttctgctgttgttttttgagcctctcagtatt
acttttgagaccttgcaggcaattttggttcatgggtttcagctgcttgaaatatcattc
catgcagtgggcaacactgtagattgccaaagatcaaaactatttgatttatcagttgca
ggttcgttttgggaatggaagggcattcttattcgcaatctaggtttcttccttgacttg
gcaacactgataatggcagttggccattatgtgcttatttggtggcttcatggcatggca
ttccatctagcagatgcagttcttttcttgaatatacgcgcattgctaactgcaattgtg
aaacgaataaagggatttatcaaattgagaatggcattaggtgctcttcatgcggcactt
cctgatgcaacatctgcagagatacaggcatatgatgatgaatgtgccatatgtcgggaa
tctatggccaaggctaaaaagcttcattgtaatcacctttttcatctttcttgcttgaga
tcttggttggaccaaggcttaaatgaagcttactcatgtccaacgtgtagaaagccactt
ttcctgggcagaactgaaaatgaggtgaattcccgtcaaataaattctggacttgatcgg
caaaatatgcctggtcacactttagctaccggagtattcccaaatcaaatgcagaaccca
gtggagggcagcccttggaggagtgcagaactggattcaggatggctgcattcttggcca
acccagagtgttgatggagcaggtccttctaccggtgttagatctgttggacttgggaga
gttcatatgatgatgaggcatcttgcatctgtcggagatactgctgttgaacatactgct
cggagcccctggtccatgaatctgtctcaggccgctgcatctgtttcatcagttccacca
aatgtcggcggaagataccctggaaatgctggcagtttacgtatgaggactaccccaagt
acaggaaatggcaacatagcaaacatacttgccatgactgagactgtacgagaggttttg
ccacatatcccggatgagatgattattcaggacttgcagagaacaaattctgttactgac
acagtgaataatcttcttctccaaatgtga
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