Gossypium hirsutum (upland cotton): 107911802
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Entry
107911802 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107911802
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107911802
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107911802
NCBI-ProteinID:
XP_040961674
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All DBs
Position
D11:complement(6232139..6234176)
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AA seq
454 aa
AA seq
DB search
MKITKAQLVFLFSFATLIPTLWGGGGNIADFDDVWKRRADQAWKNTLAAYEPSPENVTTK
FNENVHKALVANKSNKTKDLEGGDDRRNLRGKHKKYTGPCMATNPIDRCWRCRPDWAENR
KRLTQCVIGFGHRTEGGEKGKYYEVTDNSDDDPVNPKPGTLRFAVIQKRPLWIIFAHDMH
IKLSRELIVQSKKTIDGRGANVHIAHGAGITLQFVDDVIIHSIHIHHIGPSKAGLIRDSV
DHIGLRTTGDGDGINIFGSTNIWLDHLSMSECQDGLIDAIQGSTAITISNCHFTHHNDVI
LLGASDTYERDKLMQVTVAFNHFGKELIQRMPRCRWGFFHVVNNDYTHWKMYAIGGSMHP
TIISQGNRFIAPDDPKAKEITNRNYAPQSEWSKWVWRSEGDLLLNGARFTKSGPDKSPHF
DFTKMQMIKAKPATFVRRLTRFAGALDCEKGNKC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataacaaaggcccaactggttttcctgttttcatttgccacactaattccgaca
ctatggggtggtggtggcaatattgctgattttgatgacgtctggaagcgacgtgccgat
caggcatggaagaacactctggcagcttacgaaccaagcccagaaaatgtcaccactaaa
ttcaatgagaatgttcacaaggctcttgttgcaaataaaagtaacaaaaccaaggatttg
gagggtggtgatgataggaggaacttgaggggcaaacacaaaaagtacacgggtccatgc
atggccaccaaccccatcgataggtgctggcgatgcagacctgactgggccgagaaccgt
aagaggctgacgcaatgcgtgattggttttggccaccgaaccgaaggaggagagaaaggg
aaatactatgaggtgactgataattccgatgatgacccggtcaatcctaaacccggaact
ttacgttttgccgtcatccagaaaaggccattgtggatcattttcgctcatgacatgcac
atcaaattatcacgtgagctcattgtccaaagcaagaagacgatcgacggtcgtggagcc
aacgttcatatcgcgcatggagctggcatcacacttcaattcgtggacgatgtcatcatc
catagcattcatattcatcacattggtccaagcaaggctggcctaatcagggactcagtg
gatcatataggtttgaggacaacgggtgatggggatggcattaacatcttcggatccaca
aacatttggctcgatcacctttccatgtcggagtgtcaagatggactcattgatgctatc
caaggttccactgccatcacaatctcaaactgccatttcacccaccataacgatgtgata
ctactgggtgcaagtgacacctacgaaagagataaactaatgcaagtcacagttgcattc
aaccattttgggaaagaactgatacaaagaatgccgagatgcaggtggggattctttcat
gttgttaacaatgattacacacattggaaaatgtatgcaattgggggtagcatgcatccc
accattatcagccaaggtaataggttcattgctccagacgatcccaaagccaaagagata
acgaacaggaactatgcaccccagtcggaatggagcaagtgggtatggagatcggaagga
gatttgttgttgaacggagcccgttttacaaaatcggggccggataaatctccccatttt
gacttcaccaagatgcagatgatcaaagccaagccagcaacatttgtgagaagactcacc
cgttttgctggggctcttgactgcgaaaaggggaacaagtgttag
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