Gossypium hirsutum (upland cotton): 107911887
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Entry
107911887 CDS
T04793
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107911887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107911887
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107911887
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107911887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
107911887
NCBI-ProteinID:
XP_016695348
UniProt:
A0A1U8K2Z5
LinkDB
All DBs
Position
A11:7649065..7666195
Genome browser
AA seq
2414 aa
AA seq
DB search
MLNLSSTLSTHVRFLLQSLTEANADSVSRDLCQFIEYGIEGSILVLQTCLDCLNSHKTDS
KNLQSEQVVASIFRHAMDKPNFCTVFCQSLRSMDISENFLENFSKAMQFSMSEKIGIGLA
LSGSENPDIKICGKNFCMAQIEELNLNTASFDSTEQIQNVVMFLQCSGALSKHVDSFMQM
LSLVQANGAAQFILTPILSDESHGANFSRKMDFFNESGENDFDALLEEMEKEMSMADIIK
ELGYGCTVDVAHCKEILSLCLPLTEMTIARILGTIVLTYAGLEDNQTMFSTFSLALGCNT
SYDLPSLSSWNIDVLVKTIKQFAPGTNWIRVIENLDHEGFYIPSEAAFTFFMSVYQHACQ
DPFPLHAICGSMWKNSEGQLSFLKYAVSAVPDVFTFDHSSRKLAYMDAVYGHKLHLANEN
HAWLCLDLLDVLCQLAERGHTIFVRSMLDYPLKHCPEVLLLGMAHVNTAYNLLLHDVTST
VFPMIIKNALGAGMVLELWNVKANLVLRGFVEVHNSEPDGMIRILEVCQELKILSSVLEM
IPFPSGIRLAVLASRKEVIDFEKWLSSNLNTYKDVFLEECLKFLKEIQFGGSQEFSATPF
HHSTAVLNLYLEASSTIIKVLKANTGVIASTQLLEEMERLHVTIMDSTPKLQNGGSTESS
TSDGYGDDIEAEANSYFHQMFSEQLTTDAMVQMLARFKDSSVRREQLIFECMIANLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRCVLDALRKPADSKMFLFGTKALE
QFVDRLIEWPQYCNHILQISHLRATHSELVAFIERALIRISSGHLESDGSNNPSVHHQAS
SQVTPVNGELNSSSIAQPGPQLSSQLQLPRHDSSHDDRIKAPAASSNDVKPLVSSVGQPS
VAPLSDASSIQKVSQSVGSGSSMLSASPGFVRSSRGVTSTRFGSALNIETLVAAAERRET
PIEAPASEIQDKISFIINNISVANIEAKGKEFTEILQEQYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKVNSKALTKAIIQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILSLLAE
IYSMPNLKMNLKFDIEVLFKNLGVDMKDISPTSLLKDRKRELEGNPDFSNKDVGVSQAPV
VAEVKSGIISPLNHVDLSLEGASPPNSGGPTHLLSQYAGPLRLSSGALVEDEKLAALGLS
DQLPSAQGLFQATPSQSPFSVSQLSTSIPNIGTHVIINQKLSSLGLHMHFQRVVPIAMDR
AIKEIVAGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKE
PLRGSISSQLRNSLQGLSVGSDLLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIA
TQLSLRRKHRDPTFFDPSMYGQGSVGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSG
QNSHSMSASPSSLSGDAGLTGTFGSTSGQGTPGYTSGPGTLGQLDVTSEAIETSSAALLS
ASSIHIGAGAALTQQTTENDPLNASFPSTTLAPELHSVETTDAVKELGPTPQPLPSSAVT
ERLGSSISEASLSTRDALDKFQLVALKLESLVTTDGREADIEGLISEVAEIILRCVSRDE
AALAVAQKVFKGLYENASNSLHVNAHLAILAAVRDVCKLAVKELTSWVIYSDEERKFNKD
ITVGLIRSELLNLAEYNVLMAKLIDGGRNKAATEFAMSLLQTLVTDESRVISELHNLVDA
LAKVASKPGSSESLQHLIEMIRNPSASMAVLSSASIGKEDKTRQSRDKKAPGHTPASRED
NSNIEALEPDPAGFKEQVSMLFAEWYQICELPGANDGPCNHYIVQLHQNGLLKGDDMTER
FFRIITELSVAHCLSSEFMNSGTLQSPQQVQTLSFLAIDIYAKLVVSILKFCPVEQGSSK
LFLMSKILTVTVRLIQKEAEDKKAAFNPRPYFRLFINWLLDLGSLDPVPDGANFQILTAF
ANAFHALHPLKVPAFSFAWLELVSHRSFMPKLLTGNGQKGWPYIQRLLVDLLQFLEPFLR
NAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDCHFTFCDVIPPSCIQMRNIILSAFPRNM
RLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKMRPQGGSTFLTELK
QRLLLSPSEAASAGTHYNVPLINSLVLYVGMQAIQQLQSRVPHAQSAASTAPMSVFLVSA
ALDIFQTLIADLDSEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFAEANQEIIQEQITR
VLLERLIVNKPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPV
DDSIDSGWVSDNAH
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacctttcgtccacgctctcaactcacgttcggttcctgctccagtccttgacc
gaagccaacgccgactcagtttctcgagacctctgccagttcatcgaatatggtatagag
ggaagcattctggtgttgcagacctgcttagattgcttgaactctcacaagacagattca
aagaatttgcaatctgaacaagttgtagcatcgatttttagacatgcaatggacaagcca
aatttttgtactgtcttctgtcagtcactaagaagtatggatatcagtgagaactttttg
gagaatttctcaaaagcaatgcagttttccatgtctgagaaaattggcattggtcttgct
ttatctggttctgaaaatcctgatataaaaatctgtgggaagaatttctgtatggctcag
attgaggaactgaacttgaatactgcctctttcgattctactgagcaaattcagaatgta
gttatgttcctccagtgctctggtgctctttccaagcatgtagattcctttatgcagatg
ttatctctagttcaagctaacggtgctgcacagtttattttgactccaatactttcagat
gaatcacatggggctaatttctcaaggaaaatggatttcttcaatgaatctggagaaaat
gattttgatgcacttttagaagaaatggagaaggaaatgagcatggctgatatcattaag
gaactaggctatggatgcactgttgatgttgcacactgcaaagaaattttatctctttgc
ttacctctaacagagatgactatagctagaatacttggcacgattgtcctcacctatgca
gggcttgaggacaaccaaaccatgttttcaacatttagcctggcccttggttgcaacacc
tcatatgatttgccttcattgagctcctggaacattgatgttctcgtaaaaactataaag
caatttgctcctggtaccaactggattcgtgttattgaaaacctggatcatgaggggttc
tacattcctagtgaagcagcattcacttttttcatgtctgtatatcaacatgcatgccag
gacccctttccactccatgccatttgtgggtccatgtggaagaatagtgaaggtcagcta
tcttttctaaaatatgctgtatcagcagtgccagatgtatttacctttgaccattcttcg
aggaagctggcctatatggatgcagtgtacggccataagcttcaccttgcaaatgaaaat
catgcctggctgtgtcttgacctcttagatgtgctatgtcaactagctgaaaggggtcac
accatctttgttcgatcaatgcttgactaccccttaaaacactgccctgaagtcctgctt
cttgggatggcacatgttaatactgcttataatctcctcctgcatgatgtaacttccaca
gttttcccaatgataattaagaatgctctgggtgctggtatggtacttgaactatggaat
gtgaaggctaatcttgtcttgcggggatttgtagaagtacacaacagtgagccagacggc
atgattagaattttggaagtttgtcaagagttaaagattctatcatcagtgctggagatg
ataccttttccttctggcattagattagcagtccttgcttccaggaaagaggtcatagat
tttgaaaagtggttgagtagtaacctgaatacatataaagatgttttcttggaggagtgc
ctaaagttcttgaaggagatacagtttggtggatcacaagagttttctgccacacctttc
catcatagtactgctgttttgaatctttatttggaagctagttctaccattatcaaggtt
cttaaagctaatactggggtgatagcctctactcagcttctcgaggaaatggaaaggttg
catgtgacaataatggattctactccaaagttgcaaaatggtgggtccacagagtcttca
acctctgatggatatggagatgatattgaggcagaagcaaactcttactttcatcaaatg
ttttctgaacagttgactactgatgcaatggttcaaatgcttgcccgattcaaggattct
tctgtgagaagggaacaactgatatttgagtgcatgattgcgaatctgtttgaagaatac
cgatttttccccaagtatccagaaagacagctcaaaattgctgcagttctctttggctct
gttatcaagcatcaacttgtaactcacctcactcttggaattgccttgcgttgtgttcta
gatgcattgcgtaaacctgcagattcaaaaatgtttttgtttggaaccaaggccttggag
cagtttgtggatcgtctgattgagtggccgcagtattgcaaccatattttacagatatct
cacctgcgtgccactcattcagagcttgttgctttcattgaacgagctcttatcaggatt
tcatcaggtcacttggagtcagatgggagcaacaatccttctgttcatcaccaggcttcc
tctcaggtgaccccagtaaacggggagttaaatagctctagcatcgctcagccagggcca
caactttcttctcaacttcagcttccaagacatgatagttctcatgatgatcgtattaaa
gcccctgctgcatcttccaatgatgtgaaaccactggtgtcttctgtagggcagccttca
gttgctcccttgagtgatgcttctagtattcagaaagtatcgcaaagtgtaggcagtggt
tcgtctatgctgtctgcttcccctggttttgttcgatcttctcggggcgttacttctact
aggtttggctctgctttgaacattgaaacactagttgctgctgccgagagaagagagacg
cccatagaggctccggcatctgagattcaagacaagatatcattcataatcaataatatt
tcggttgcaaatattgaagctaaaggaaaagagttcactgaaatcctgcaagagcagtac
tatccttggtttgcccaatacatggttatgaaaagagcaagcattgagccaaattttcat
gatttgtatttgaagtttcttgacaaagttaactcaaaggctttgactaaggcgatcatc
caggctacatatgagaactgcaaggttttgttgggatctgagcttataaaatcaagctct
gaagagcggtcgttgctaaaaaatttgggtagttggcttgggaagttaacaattggccga
aatcaagtcctgagagctcgtgaaatagatcccaaatctctgattatagaggcgtatgag
aaggggctaatgattgcagttatcccatttacatcaaagattcttgagccgtgtcaaagc
agtctggcataccaaccccctaatccttggaccatgggcattctgtcattactagctgag
atttactcaatgccgaacttgaaaatgaatctcaagtttgacatagaggttctattcaag
aaccttggtgtggatatgaaggacatttcaccgacttctcttctcaaggatcgtaaaaga
gaactcgaggggaatcctgatttttctaataaagatgtcggggtatcccaagccccagtg
gttgcagaagttaaatctggaataatttctccacttaatcatgttgatttatctcttgag
ggtgctagtccaccaaattctggtggccccacacatttgttatcacagtatgctgggccc
ttgcgtctttcttctggtgcattggtggaggatgaaaaactagctgctttaggcctgtct
gatcagcttccttctgcacaaggactatttcaagccactccatcacagtcacctttttct
gttagtcagctgtccacgtcaattcctaacattggaactcatgttattatcaatcagaag
ctcagttctctaggcttgcacatgcacttccagagggtagttccaattgcaatggacaga
gctatcaaagagattgtagctggtattgttcagcgcagtgtttctatagcaactcaaaca
accaaggagcttgttttaaaggattatgctatggaatcagacgagacacggatctataat
gctgcacacttgatggttgcaagtttggctggaagtctagcgcatgttacatgcaaggaa
cctttacgtggctctatatcaagtcagctgaggaattcacttcagggtttgagtgttggg
agtgatcttctagaacaagctgttcagcttgttactaatgataaccttgatcttggctgt
gcagtgattgaacaggctgctactgataaggcaatacaaacaattgatggagagatagct
actcaactttctttaagaagaaagcatagagatcccacattttttgatccaagcatgtat
ggacaaggttctgtgggtgttgtgcctgaggctcttcgacctaaaccaggtcacttgtct
ctctctcagcagcgagtgtacgaggactttgttcggcttccttggcaaaatcaatctggc
cagaattcacattctatgtctgctagtccttcaagcttatctggtgatgctggtctaacc
ggcacatttggttcaacatcagggcaaggtacccctggttacacatctggccctggaact
ctgggacaattggatgttacttctgaggcaattgaaacttcgtcagctgctcttttaagt
gcttcctcaattcatattggcgcaggagctgctcttacccagcagactactgaaaacgat
cccctcaatgcttcattcccttcaacaactttggcccctgaattgcattcagtggagacc
actgatgcagtaaaagaactgggacctacaccacagccgttaccttcatctgccgtaacc
gagcgtcttggaagtagcatctcggaggcttcattgagcacaagggatgcattggataaa
tttcagcttgttgctctgaagttggaaagtttggtgacgactgatggcagagaagctgac
attgagggactgatctccgaggtagctgaaatcatactcagatgtgtaagtcgggatgag
gctgcacttgctgtggctcaaaaggttttcaaaggcttatatgagaatgcatccaatagt
cttcatgtcaatgctcatcttgctattctggcagctgtccgtgatgtttgcaagcttgct
gttaaggagcttactagttgggtgatatattcggatgaggagcgaaagttcaacaaagat
atcacagttggccttattcgaagtgaattgctgaaccttgcagagtacaacgttcttatg
gcaaaacttattgatgggggaaggaataaagctgctacggaatttgcgatgtcacttctt
caaactttggttactgatgaatccagagtcatctcagaactccacaatcttgttgatgct
ctggcaaaggttgcttcaaaacctggatcttctgaatcattgcaacatttgattgagatg
atcagaaatccttctgcaagtatggcagttttatccagtgcttctattggaaaggaggat
aagactaggcagtctagagacaaaaaggcacctgggcacacaccagctagcagggaagat
aatagtaatatagaggctctagaaccagatcctgcaggcttcaaggagcaggtttccatg
ttgtttgcagaatggtaccagatctgtgagcttcctggtgcaaatgatggaccttgtaat
cattacattgtacaattgcatcaaaatggactgcttaaaggggatgatatgacagaacgt
tttttccgtattatcacggaactttctgttgcacattgcctatcttctgaattcatgaat
tctggcacattacaatcacctcagcaagtgcaaactctctctttcctggccattgatatt
tatgcaaaacttgtggtgtcaatccttaagttttgcccagtggaacagggatcaagtaaa
ctctttcttatgtccaagattttgactgtgactgtaagacttattcaaaaagaggctgag
gataagaaagcagcttttaatccaagaccatatttcagattatttattaattggctgtta
gatcttggttccttggaccctgtccctgatggtgcaaattttcagatcttgactgccttt
gccaatgcatttcatgctctccatccccttaaagttcctgctttcagttttgcatggctg
gagcttgtcagtcacagaagtttcatgccaaaattgctcaccgggaatggtcagaagggt
tggccctatatccaacgattgctggtagacttgcttcaattcctggagccgtttttgagg
aatgctgagctcggagtgccggttcattttctgtataaaggcacactcagggtgctgctg
gttctacttcatgacttccctgagttcctgtgtgattgtcattttaccttctgtgatgtg
attcctccgagctgcatacagatgcgaaatattatccttagtgcttttccacgcaatatg
aggttaccagatccatctactcccaacttaaagattgatttgcttccggaaatcagagaa
ccccctcgcatcctttctgaggttgatgctgctctgaaggcaaaacagatgaaggctgat
gtagatgagtatctcaagatgaggccacaaggaggatctacatttctaactgaactgaaa
caaagactactcctttcaccaagcgaggcagcatcagctggtacccattataatgttcca
ttaatcaactcactggtgctatatgtcggtatgcaggcaattcagcaactgcagtcgaga
gtacctcatgcacagtcagcagcaagcactgctccaatgagtgtgttcttagttagtgct
gccttagatattttccagactctaatagcagaccttgattccgaggggcgttatcttttt
ctcaatgcaattgcgaaccaattgcgatatccaaacaaccatacacattacttctccttc
atcttactatacttatttgccgaagcgaatcaggaaattatccaagagcaaatcacaaga
gttttgttggaacggctgattgttaataaacctcatccttggggtctcctcattaccttc
attgagctcataaagaatcctagatacaacttctggaatcgatctttcataaggtgtgca
cccgagattgaaaaactctttgaatctgttgcaagatcatgtgggggcttgaaacctgtg
gacgacagtatcgattctggttgggtttctgacaacgcacactag
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integrated database retrieval system
