Gossypium hirsutum (upland cotton): 107911969
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Entry
107911969 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107911969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107911969
03036 Chromosome and associated proteins [BR:
ghi03036
]
107911969
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107911969
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107911969
mRNA degradation factors
5'-3' decay
Decapping complex
107911969
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107911969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
107911969
NCBI-ProteinID:
XP_016695481
UniProt:
A0A1U8JYX4
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All DBs
Position
D11:7974792..7980641
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AA seq
494 aa
AA seq
DB search
MNSRGRYPPGIGVGRGGGVNANPSFQSRPSQQHYVQRNLLQNHQHFQQQQHQQQQQHQQQ
LWLRRDQLPGGNDSSVVDEVEKTVQSEAVDSSSQDWKARLNVPPPDTRYKTEDVTATKGN
EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE
KIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVH
LLVGTPGRILDLAKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIHFLPANRQILMFS
ATFPVTVKDFKDRYLKKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQS
IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG
IDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI
KQIPPHIDQAIYCR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtagagggaggtatccaccgggaatcggtgttggccgagggggcggagtgaac
gcgaaccctagctttcagtcgaggccttcgcaacaacactacgtgcagaggaatttgttg
cagaatcaccagcactttcaacaacaacaacaccagcaacaacaacagcatcagcaacag
ctgtggctcagacgagaccagttgcccggcggcaatgactccagtgtggtcgatgaggtc
gagaagaccgtacaatctgaagccgtcgactctagttcgcaagattggaaggcgaggctg
aacgtaccgccacctgatacacgctacaaaacagaggacgtgacagctaccaaaggaaat
gaatttgaggactattttctgaaacgtgaacttcttatgggaatatatgagaagggtttt
gaaagaccatctcctattcaggaagagagtattcctattgctttaaccggaagtgatatt
cttgctagagccaaaaatggcactgggaagacagcagcattttgtattcctgccttggaa
aaaattgaccaagataacaatgttattcaagttgtcatacttgttccaacacgagaactg
gctcttcagacatcacaagtgtgcaaggagctcgggaagcatttacaaattcaagtcatg
gtcacaactggaggtaccagtctcaaggatgatatcatgcgactgtatcaaccagttcat
ttgctggttggaactcctggcagaattcttgaccttgctaaaaagggtgtttgcattttg
aaagattgttcaatgcttattatggacgaggcagataaacttctgtctccagagtttcaa
ccttctatagagcagttgatacattttcttccagcaaatcgtcaaattttgatgttttca
gccacatttcctgttactgttaaggacttcaaagacagatacctaaaaaaaccttatatt
attaatctaatggatgagcttactctgaagggtattacacaatattatgcttttgtggaa
gaaagacagaaagtccattgcctgaatacccttttctctaagctgcaaataaaccaatca
atcattttctgcaactcggtcaatcgggtggagctgttggccaagaaaattacggaactt
ggctattcttgcttttatattcacgcaaaaatgcttcaagaccatcgtaacagagtattt
catgatttccgcaacggtgcatgcaggaaccttgtttgtactgatctttttacaaggggt
atagatatccaagctgtgaatgttgttattaacttcgacttccccaagaactcagaaaca
taccttcatagagttggtcgatcaggaaggtttggtcatcttggattggctgtgaatttg
atcacttacgaggaccgctttaacttgtataggattgaacaagaacttgggactgaaatt
aagcaaattcctccacacatcgatcaggcaatttactgccgatga
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