Gossypium hirsutum (upland cotton): 107912021
Help
Entry
107912021 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 35A isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107912021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107912021
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
107912021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Urb2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
107912021
NCBI-ProteinID:
XP_016695540
UniProt:
A0A1U8JZ80
LinkDB
All DBs
Position
D11:3774475..3781571
Genome browser
AA seq
790 aa
AA seq
DB search
MIADGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNIRDALKYSAQMLSELRTSRLSPHKY
YELYMRAFDELRKLEMFFKEETRRGCSIVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGIQHPVRGLFLRSYLAQVSRDKLPDIGSEYEGDADTVVDAVEFVL
QNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGIDLDMYKETVLP
RVLEQVVNCKDEIAQYYLMDCIIQVFPDEYHLQTLDVLLGAFPQLQPTVDIKTVLSRLME
RLSNYAASSADVLPEFLQVEAFSKLNNAIGKVIEAQPDMPILGVITLYSSLLTFTLHVHP
DRLDYADQVLGACVKKLSGKEKLEDKKATKQIVALLSAPLDKYNDIVTALKLSNYPRVME
YLDSETNKVMATVIIQSIMKNKTRISTADRVEALFELIKGLIKDLDDAFHDEVDEDDFKE
EQNSVARLIQLLHSDDPEEMFKIICTVRKHILGGGPKRLPFTVPPLVFSSLKLVRQLQGQ
EENPFGEEESTTPKKIFQVLNQTVETLSNIPAPELALQLFLQCAEAANDCDLEPVAYEFF
TQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDNVKDGERVLLCLKRALRIANAAQQMSNAARGSAGSVTLFVEILN
KYLYFFEKGNPQITVAAIQSLIELITTEMHSDSSTPDPAADAFFASTLRYMEFQKQKGGA
IGEKYEPIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcagatggagtcgaagatgaagagaaatggctcgccgccggcatcgctggcctc
caacagaacgctttctacatgcatcgcgctttggattcgaacaatatcagagatgctttg
aagtactctgctcagatgttatcagaacttcgaacctcaaggctttcccctcacaaatac
tacgaattatatatgcgagcatttgatgaattgaggaagctggagatgttctttaaggaa
gagacaaggcgtggttgctctattgtcgatctgtatgagctagtacaacatgctggcaat
atattgccaagattgtatctcctctgtactgtaggctctgtttatattaaatccaaggaa
gctcctgctaaggatgttcttaaagatcttgttgaaatgtgccgtggaattcagcatccc
gtacgtgggctctttcttaggagttacctggctcaagttagcagggataaattgcctgac
ataggttctgagtatgaaggggatgcagacactgtcgtggatgctgtggaatttgtgctt
caaaactttacggagatgaacaagttgtgggtgcggatgcagcaccagggacccgcccga
gaaaaggagaaaagagagaaagagaggagcgagctaagagatcttgttgggaagaatctt
catgtgctcagtcaaatagagggtattgaccttgatatgtacaaagagactgttcttccc
cgtgtacttgaacaggttgtcaattgtaaagatgagatagctcaatactatctaatggat
tgcataattcaagtctttcctgatgagtaccacttgcaaactcttgatgtattattgggt
gctttcccacaacttcagccaactgttgacatcaaaaccgtgctatctcgattaatggaa
aggctatcaaattatgctgcttcaagtgcagatgtgttgcctgagttcttgcaagtagaa
gctttctcaaagttgaataatgctattggaaaggtgattgaagcacagcctgatatgcct
atccttggtgtgataactctatattcgtctcttcttacatttactctccatgtccatcct
gacaggcttgattatgccgatcaagttttgggagcatgtgttaaaaagctctctggcaaa
gaaaagctcgaagacaagaaagcaacaaaacagattgttgcactcttaagtgctccactt
gacaaatacaatgacattgttacagcattgaagctttcaaattatcctcgtgttatggaa
taccttgacagtgaaacaaataaagtcatggcaactgtgataattcaaagcattatgaag
aacaaaactcgtatctctactgcagacagggttgaggcgttgtttgaactgataaaaggt
cttattaaggatctggatgatgcttttcatgatgaggttgatgaagatgatttcaaggag
gagcagaattctgtagcacgtcttattcagttgttgcatagtgatgaccctgaagagatg
tttaagataatatgcacggtgaggaagcatatcttgggtggaggaccaaaacgcctaccc
ttcactgtccctccccttgttttctcttcacttaagttggttcggcaattacaaggccaa
gaggaaaatccttttggagaagaggaatcaactacacccaagaaaatattccaggttttg
aatcagactgttgaaactctctctaacattccggcccctgagttggcactacagttgttt
ctgcagtgtgctgaggctgcaaatgactgtgatttagaacctgtggcatatgaatttttc
acacaagcttacattttatacgaggaagagatttcagactcaagggcacaggttactgct
atacatttaataattggaactctgcagaggatgcatgtctttggtgttgaaaatagggat
actttaacacacaaggctacagggtattctgcgaaacttttgaagaagcctgatcagtgc
agagctgtttatgcatgctcgcatctcttctgggttgatgatcaagacaatgtaaaagat
ggagagagggtcttgctttgccttaagcgggcactgagaattgcaaatgctgctcaacaa
atgtcgaatgcagcacgaggtagcgctggatcagtcactctctttgttgagatactgaac
aagtacctttatttctttgagaaggggaacccccagatcactgttgctgcaatccagagt
ctgattgaattaataacaaccgagatgcatagtgactctagcacaccagatccagcagca
gacgctttctttgccagcactctcagatatatggagtttcagaaacagaaaggtggagct
ataggtgaaaaatatgaacctatcaaggtgtga
DBGET
integrated database retrieval system
