Gossypium hirsutum (upland cotton): 107912045
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Entry
107912045 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107912045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107912045
03009 Ribosome biogenesis [BR:
ghi03009
]
107912045
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107912045
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107912045
Complex B
107912045
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107912045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107912045
NCBI-ProteinID:
XP_016695573
UniProt:
A0A1U8K3K9
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All DBs
Position
D11:3590055..3594466
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AA seq
626 aa
AA seq
DB search
MTPYDRRYGDPQSYRQRRSDFMGQPPPVGPPTMGPGMVMPSSYPRGGQIPYGGPPTAHPP
SFHGRVHGPVRGQGDFDSYSSFRPPAGRFEMGRGGDIGHSHADRRSDGIRVREAGRGGGG
RGGGGRGGRGGGGRGYGGRHGGSSRGDLDNVSLPRKNFGKLVPFEKNFYIESPAVREMTE
QEVMFYRRTRDIKVQGHDVPKPIRMFRDANFPDCCLEVIANLGFVEPTPIQAQGWPMALK
GKDLIGIAETGSGKTLAYLLPALVHVKAQPPLVHGEGPIVLILAPTRELAVQIQEEAAKF
ANNASIRSTCIYGGAPKGPQTRDLKRGVEIVIATPGRLIDMLEAQNTNLKRVTYLVLDEA
DRMLDMGFEPQIRKIDSQIRPDRQTLYWSATWPKEVESLARQFLSNPYKVIIGSPDLKAN
QSINQVVEVITDLEKYNRLIKLLKDLMDGNRILIFMETKKGCDQVTRQLRMDGWPALSIH
GDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRT
GRAGAKGTAFTFFTQANAKYARDLIKLLQDAGQVVSPALSTLARSAGSKFGGSGGNFRAR
GRGSYGNRAMISGSNAVSLGAKKRPW
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgactccttacgaccgaagatatggcgacccccaatcttaccgtcagcgtagaagtgat
tttatgggccaaccgcctccggtaggtccacctactatgggtccaggaatggtcatgccg
tcctcttacccccgcggcggacaaattccttacggtggccctccaacagcgcaccctccg
tcttttcatggaagagtgcacgggcccgttcgaggtcaaggggatttcgattcgtactcg
agcttccggccacccgcgggaagattcgagatgggccgcggtggggacataggtcattct
catgcagacaggagaagtgatgggataagagttcgtgaagccggccgtggtggaggcggt
agaggcggtggtggccgtggcggccgtggcggcggcggaagaggttatggagggaggcac
ggagggtcctctagaggggatttagacaatgtttcgcttccaaggaaaaattttggcaag
ttggttccttttgagaagaacttttatatcgaaagtcctgcagttagagaaatgacagag
caagaagtaatgttttatcgtagaacacgggacattaaagttcaaggacatgatgttcca
aaaccgataaggatgttccgtgatgctaattttcctgattgctgtcttgaggtgattgcc
aatttgggttttgttgagccaactccaattcaagctcagggttggcctatggctttaaag
ggtaaagatctcattgggattgctgagactggttctggaaaaacactggcatacttactg
ccggcattggtgcatgttaaagcacagccaccattggtgcatggtgagggtcctattgta
ttaatattagcacctacgagggagttggctgttcaaattcaagaagaagctgcaaagttt
gcgaataatgctagcataaggagtacttgcatctatggcggtgctcctaagggaccacaa
actagggatcttaaaagaggtgttgagattgtaattgccacacctggtcgactgatagat
atgctagaagctcaaaacacaaacttgaaacgagtgacttaccttgttctggatgaagct
gatagaatgttggacatggggtttgagcctcaaataagaaagattgattctcagattcgg
cctgatagacaaacattgtattggagtgcaacgtggcctaaagaagttgaatctttagca
aggcagtttttaagcaacccatataaggttatcattggatcacctgatctgaaagcaaac
caatctattaaccaagttgttgaagtcataacagatttagaaaagtacaacaggctaatc
aagttgctgaaggatctgatggatgggaaccgaatactaatattcatggagacaaagaag
ggatgcgaccaagttactaggcagctcagaatggatggatggcctgccctgtcgatccat
ggtgataaaaaccaggctgaaagagattgggtcctggctgaatttaaaagtggcagaagt
cctataatgactgccactgatgtggctgcacggggtcttgatgtgaaggacataaagtgt
gtgatcaactacgattttccttcgagtctggaggattatgtacataggattggtagaact
ggtcgagcaggagctaagggaactgcttttaccttcttcacacaggcaaatgcaaagtat
gctagggaccttatcaagctcctgcaagatgctgggcaggttgtctcccccgcattgtct
acattggctcgttctgcaggttcgaagtttggaggttctggaggaaactttcgtgcccga
ggacgtggcagctacggtaaccgggctatgatatcaggatcaaatgctgtatctctcggt
gcaaagaagagaccctggtag
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