Gossypium hirsutum (upland cotton): 107912392
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Entry
107912392 CDS
T04793
Name
(RefSeq) sister-chromatid cohesion protein 3 isoform X1
KO
K06671
cohesin complex subunit SA-1/2
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107912392
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
107912392
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_SCC3-SA
SCD
STAG
PDS5
HEAT
HEAT_2
Cnd1
DUF507
AT_hook
Motif
Other DBs
NCBI-GeneID:
107912392
NCBI-ProteinID:
XP_040961981
LinkDB
All DBs
Position
D11:11872738..11881015
Genome browser
AA seq
1133 aa
AA seq
DB search
MDDVVPLASEITTRHSKRARVHALDGGDEPSKANGNDRENQERSSDGSDRSPNPGEREGS
PDDFEEIRPKTKRPRPAEGTSDVPNRSEERLIEVIKGNGKHISQAVKQWVERYEKNPKPA
MVELLMMLFEACGAKYYIREEYLDETDVDDVVVALVNLARKVSCPYIYIFVYGEIEDYQG
SKKKEFKNFKENLVSFWDTLVIECQNGPLFDKDLFDKCMDYIIALSCTPPRVYRLVASLM
GLQLVTSFISVAKRLAVQRDTTQRQLNAERKKRVDGPRVESLNNRLSATHEQKLVIDEMM
RKIFTGLFVHRYRDVDPNIRMSCIQSLGVWILSYPTLFLQDLYLKYLGWTLNDKSAGVRK
AAVLALQNLYEVEDNVPTLSLFTERFSNRMIELADDVDVSVAVCAIGLVKQLLRHQLIPD
DDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQPGPKGNESEIHLGRMLQILREF
STDPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIELTDEDATNLTRLLFASVRKAV
GERIVPASDNRKQYFSKAQKEAIENNRRDLTIAMMKNYPLLLRKFMADKAKISSLVEIIV
YMNLELYSLKRQEQNFRTTLLLIKDAFFKHGEKDALRSCVKAIKFCSTESRGELQDFARN
KLKELEDELLDKLKSATKEVIDGEDEYSLLVNLKRLYELQLSRPISIDELYGDSITILHS
FRNLDDEVVSFLLLNMYLDVAWSLHSIINSETVSEGSLSSLLSKRDTLLEELEYFLNAPP
EVGEGSKSGNQLACRVCTILADVWCLFRKTNFSSTKLERLGYCPDVSILQKFWTLCEKQL
KISDDTEDEDVNKEYIEETNRDTVMIAAAKLIASDTIPKDYLAPEIISHFVMHGAGIAEI
VKSLITVLRKKDDNVSEIFLEALKRAFLRHLELSRSDDESIKSESFQECKNLAARLAGIF
VGAARNKHRPEILKIVKEGIEYAFEDTPKHLSFLEASVLHFASRLPAPDIRDVLKDVQKR
TENVNAEEDPSGWRPYNTFYESLLEKCAKNEGIQDEKEWTTTRQRGRPRKRQNIEGRRLF
DEHGSSDEEDSINTSDQEDAQVEGDEEDDNAPLIHSLKSTSKLRSLRVSRQEN
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgtcgtgcctctagcctccgaaattaccactcgccattcgaagagggctagg
gttcatgctctagacggtggagatgagcccagcaaggcaaacggtaatgatagggagaat
caagaaaggagcagcgacggcagtgataggagccccaacccaggggaaagggagggttca
ccagatgattttgaagaaattcgtcctaaaactaagcgacctcgacctgctgaggggact
tctgatgtccccaacagatctgaagagagattaattgaggttatcaaaggtaatggtaaa
catatttctcaagctgtcaagcagtgggttgagcgatacgagaagaatccgaaacctgct
atggttgaactcttaatgatgctttttgaggcatgcggggcaaagtattacatcagggaa
gagtatctggatgagactgatgttgatgatgttgtggttgctcttgtcaaccttgctaga
aaagtatcctgtccatatatatatatatttgtttatggggaaattgaagattatcagggt
tcaaaaaagaaggaattcaagaatttcaaggagaatcttgtttcattctgggacactttg
gttattgagtgccagaatgggcctttgtttgataaagatttgtttgacaagtgtatggat
tatataattgcactgtcgtgcacaccaccaagagtttatcgtctagttgcttccctgatg
ggtctccagctagtcacatctttcatttctgttgcaaagaggcttgctgtacagcgtgat
actactcaaagacagttaaatgctgaaaggaagaaaagagttgatgggcctcgtgtggag
tcactaaataacaggttatcagcaactcatgagcagaaacttgtaatagatgagatgatg
cgcaaaatcttcactgggttgtttgtgcatcgatatagagatgttgatcctaatattcga
atgtcatgcatacagtcactgggtgtttggattttgtcatatcctacattgttcttgcag
gatctatacttaaagtatcttggatggactctaaatgacaaaagtgctggagtaagaaaa
gctgctgtccttgcgttacaaaatctctatgaggtggaggataatgtgcccactcttagt
ctttttactgaaaggttttctaaccggatgattgagcttgctgatgatgttgatgtttct
gtggctgtatgtgccatagggcttgtaaaacaattacttaggcatcagcttatacctgat
gatgatttgggtcctttgtatgatctactcattgatgatccaccagaaatcaggcgtgca
ataggagaattagtatatgaccacttaattgcgcaaaaatttaatagttcccaacctggc
ccaaaaggcaatgagagtgagattcatcttggaagaatgttgcagatattacgggagttt
tcaacggatcccattttaagtatatatgttatcgatgatgtctgggagtacatgaaggcc
atgaaggattggaagtgtatcatctccatgcttttggatgagaatccattaatagagcta
acagatgaagacgcaacaaacctgactaggcttctttttgcttctgtcagaaaggctgtc
ggagagaggattgttcctgcttctgataatcggaaacaatatttcagtaaagctcaaaaa
gaagcaattgaaaacaataggcgggatttaactattgccatgatgaagaactacccatta
cttctacgtaaattcatggctgacaaggcaaaaatttcatcattggttgagattattgta
tatatgaaccttgagctttattctctgaagagacaggagcagaatttcagaactactctt
ctgctcatcaaagatgcatttttcaagcatggtgagaaggatgcattgagatcttgtgta
aaggctattaaattctgttccactgagagtagaggagagctgcaagattttgctcgtaac
aaactaaaggagcttgaggatgagcttcttgataagcttaaatctgcaactaaagaagtg
atcgatggagaggatgagtattctcttcttgtgaatttaaaaagattgtacgagcttcaa
ttgtcaaggcctatatcaattgatgaactctatggagatagtatcacaatcttgcacagc
ttcagaaatttggatgatgaagttgttagttttctgctgctgaatatgtacttggatgta
gcctggtctctgcactctattataaacagtgaaactgtctctgaaggatccttatcatct
ctcctgtctaaacgtgataccttgttggaggaactcgagtattttctcaatgctcctcct
gaagttggggaagggagcaaatcaggaaatcagctagcctgcagggtttgtactatatta
gcagatgtctggtgtctgtttaggaagacaaatttttcgtcaacaaagcttgaaagatta
ggatattgtcctgatgtttctatacttcagaagttctggaccctttgtgagaagcagctg
aaaatttcagatgacacagaagatgaagatgttaacaaagagtatatagaggagacaaat
agagatacagtcatgattgctgctgcaaagttgattgctagtgatacaatcccaaaggat
tatcttgctcctgagataatttctcattttgtgatgcatggagctggcattgcagagatt
gttaagagcctgattacagttctgaggaagaaagatgataatgtctctgaaatctttcta
gaagctttgaaaagggcctttcttcgacatctggaactttcaagaagtgatgatgaatcc
ataaaaagcgagtcttttcaggagtgtaagaatttggctgctcggcttgctggaatattt
gttggtgctgctcggaacaaacacagacctgagattttaaagattgttaaggaaggcatt
gagtatgcttttgaagacactccaaagcacctgtcttttctggaagcttctgtgctacat
tttgcgtcaagacttcctgcacctgacatacgagacgttctgaaagatgtccagaagagg
acagagaatgtaaatgcagaagaggatccaagtgggtggcgcccttataatacattttac
gagagtttgctggaaaagtgtgcaaagaatgaagggatccaagatgagaaggaatggaca
actacaagacaaaggggtcgtcctaggaagcggcaaaatattgaggggaggagacttttt
gatgagcatggttcaagtgatgaagaggattcaattaacacatcagaccaggaagatgct
caggttgagggagatgaggaagatgataatgctcctctgattcattcacttaagtccact
tctaagttgaggtcattgcgagtctcaagacaggaaaactga
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