Gossypium hirsutum (upland cotton): 107912511
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Entry
107912511 CDS
T04793
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107912511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107912511
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107912511
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107912511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107912511
NCBI-ProteinID:
XP_016696209
UniProt:
A0A1U8K6F4
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Position
D11:15209843..15213296
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AA seq
618 aa
AA seq
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MVILIRRRFFGTKISPNSHRHKLQWSVKQVTKSNFSDSLQEFKSHLSASEFVAVSLQNTG
SFSAPWNRVSSFDSPETAYLKVRRAAERFQLLQFAICPFTISGSKVTAHPYNFHLFPRDE
LNTGMPSYSFSCQTSYLTAMARQGFDFNACIYDGISYLSRAQELAAKVRMANPINLNHVV
EASSSPPTVADTVFVERVKSRIKHWKKSCTDSTSKKIDDALVKSLQKLVLGGEQYGSRPC
MTIDVCSERQVQLALEMLREFFDDLVALKIPTKGGGTQAVRVVLTSSKEDKSLLERELQN
AEEEQNKKMRGFREVIELVSASQKPVVSHNTLNDFSVIHSKFIAPLPLDVNEFLNSLQSI
FPHIFDVSHMMKGIGPLENVTSIPAAVSYLKNRFFAPVEMELSHGALLDESKIHGRTVVR
ICYLFAKLCSVLKITPGSIQSSDGKVLDGYANAFRSCSGNSEESLDGGIRIWTNSPRKVD
CKDLVFLWGFRNRLSAGMLKSLLQGSHDVFSEEFDVCLVDKSCAILVFFHPNLSQAFLDV
MNSEEISGSLSELVSEGLRAADYDTYKRACSLGLWETDLASSLDKASATPDRLSQSDPET
KPAEIYWCNDLIINLDDL
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggtgattttaataaggagacgtttttttggcaccaaaatatccccaaacagccatcgg
cataagctccaatggagcgtaaagcaggttaccaaatccaacttcagtgattcactccag
gagttcaagtcccacctttccgcttccgagttcgtcgcggtttcgctccagaacaccggt
tctttctccgctccttggaaccgagtctcctccttcgactcgccggaaaccgcttacctc
aaggtccgtcgcgccgccgaacgcttccagctcctccagttcgccatctgcccctttacc
atatctggctccaaagtcactgcccacccgtataatttccatttgttcccaagggatgaa
ttaaacactgggatgccttcttacagtttttcatgccaaacttcttatttgacagctatg
gctcgacaaggtttcgattttaatgcttgcatatatgatggtatatcgtacttatcgaga
gcacaagagttggcagcaaaagttcgaatggccaatccaattaatttaaatcatgttgtg
gaagcttcttcttcacctccgactgttgctgatacagtatttgtagaaagggttaaatct
cgtattaagcattggaaaaagtcctgcaccgactcgacaagcaaaaagatagatgatgct
cttgtaaaatcactgcaaaaacttgtcttagggggtgaacagtatgggtctagaccatgc
atgacaatagacgtatgcagtgaacgtcaagttcaacttgcattagagatgttgagagag
ttctttgatgatcttgttgctttaaaaatcccaacaaagggtggaggaacccaggcagtt
cgtgttgttctaacaagttcaaaagaagacaagagtcttcttgagagggagcttcagaat
gctgaagaggaacaaaacaagaaaatgaggggctttcgagaggtgatcgaattggtatct
gcttcacagaaacctgttgtctcccacaatacccttaatgatttctctgttattcattca
aaattcatagctccacttcctctcgatgtgaatgagttccttaactctttacaatccatc
tttccccatatatttgatgttagccatatgatgaagggaattggtcctctagaaaatgtg
accagcatacctgcagctgtatcttacctcaagaatcgtttctttgctcccgttgaaatg
gaactttcccatggagctttgttagatgaaagcaagattcatgggcgaactgttgtaaga
atatgttatttatttgcaaaattgtgctctgtactgaagatcacccccggttctatccag
tctagtgatggaaaagtccttgatgggtatgcaaatgccttcagatcatgttctggaaat
tccgaagaatcacttgacgggggtatcagaatttggacaaatagcccaagaaaagtagat
tgcaaggatttagttttcttgtggggattcaggaacaggctgtctgctggaatgcttaag
agcctgcttcaagggtcccatgatgttttctctgaagaatttgatgtctgtttagttgat
aagagctgtgccattctggttttctttcatcctaatttatctcaagctttcctggatgta
atgaatagtgaagaaatcagtggatcattgagcgaattggtctcagaaggcttaagggca
gcagattatgatacatacaagagggcctgtagtttgggtttatgggagacagatttagca
agttccttggacaaagcctctgcaactcctgatcgcttatctcaaagtgatccggaaaca
aagccagccgagatttactggtgcaatgacttaattattaacttggacgacttataa
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