Gossypium hirsutum (upland cotton): 107912656
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Entry
107912656 CDS
T04793
Name
(RefSeq) transcription initiation factor IIE subunit alpha
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107912656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107912656
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
107912656
Prokaryotic type
Archaeal type
TFE
107912656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
wHTH-PRTase_assc
Zn_ribbon_SprT
VPS38
Dimerisation
Zn_ribbon_8
CI-B14_5a
Motif
Other DBs
NCBI-GeneID:
107912656
NCBI-ProteinID:
XP_016696425
UniProt:
A0A1U8K1N0
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All DBs
Position
D11:17208287..17216985
Genome browser
AA seq
472 aa
AA seq
DB search
MSIEPFNRLVKLAARAFYDDVTTKGDNQPKTGRGDNRGIAVVVLDALTRRQWVREEDLAK
ELKLHSKQLRRILRLFEEEKLVTRDHRRETAKGAKIYSAAVAATADTQTGGKEGEEKIKL
HTHSYCCLDYAQIYDVVRYRMHRMKKKIKDELEDKNTVQEYVCPGCGKRYNALDALRLVS
LEDEYFHCERCNGELVAESDKLAAQDVGDGDDNARRRRREKLKDMLQKMEVQLKPLMEQL
NRVKDMPIPEFGSLQAWEARASAAGRAVNGDSGSNDPSKNSQGYGGTPMPFLGETKVEVA
FSGLDGKEDVKSESASTSLKVLPPWMIKQGMNLTKEQRGEVKQESKPDGSSAQPEFSDDK
KSTVENDDKKKIQDEYLKAYYAALYKKQQELEEAAKKQQELLDIPLATGLSDSSNRQVGM
KAKRDDNEGEDDIDWEEAPVAGNTTESYKVNDLNVEAEESGDDEDDVDWEEG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgagccatttaacaggttggttaaacttgctgctcgggcgttttatgatgac
gtgacaacaaaaggagataatcaaccaaagacgggtcgaggggataatagagggattgct
gttgtagttcttgatgctcttacaaggagacaatgggttagggaagaagatttggcaaag
gagttgaaactccattcaaagcaacttcggaggattttacggctatttgaggaagaaaaa
ttagttacccgtgatcatagaagagagacggctaaaggggcaaagatttatagtgctgca
gttgctgcgacggctgatactcaaacgggtgggaaagagggagaggagaagattaaactg
cacactcactcttattgttgtctagattatgcacagatatatgatgttgttaggtatagg
atgcatcgtatgaagaaaaaaataaaggatgaacttgaggacaagaatactgttcaggag
tatgtctgccctggctgtgggaaaagatacaatgctttggatgcattgagattagtttct
ttggaggatgaatattttcactgtgaaagatgtaatggagaattggtggcagagagtgac
aagttagccgcgcaagatgtaggagatggagatgacaatgcacgacgacgacggcgtgaa
aagttgaaggacatgcttcagaaaatggaggtacagcttaaaccattaatggaacaactc
aacagagtaaaagatatgcctattccagaatttggaagtctccaagcatgggaagctcga
gcaagtgctgctgggcgtgctgtaaatggtgattctggttctaatgatccttccaaaaat
tctcagggttatggtggcacacctatgccatttcttggggagacaaaggttgaagttgcc
ttttctggtcttgatggcaaggaagatgtcaagtctgaaagtgctagcacatccctgaaa
gttttgccaccttggatgataaagcaaggtatgaacctgacgaaggaacaacgtggagag
gtcaagcaagagtcaaagccagatggcagctcagcacaaccagaattttcagatgacaaa
aagtccactgttgaaaatgacgataagaagaagatacaggacgagtatcttaaagcttat
tatgctgctttgtataagaaacaacaagaactagaagaagctgctaagaaacaacaagaa
ttattggacattcctctagccactggtctttctgactcttccaatcgtcaagttggtatg
aaagctaaacgtgatgacaatgagggagaagatgatattgattgggaagaagctcctgtt
gctggcaatacaactgagagttataaggtcaatgatttgaatgtggaagcagaagaatct
ggagatgatgaggatgatgtagattgggaggaaggctga
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