Gossypium hirsutum (upland cotton): 107912658
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Entry
107912658 CDS
T04793
Name
(RefSeq) rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107912658
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107912658
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
BsuPI
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
107912658
NCBI-ProteinID:
XP_016696436
UniProt:
A0A1U8K1L0
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Position
A11:complement(56654909..56691201)
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AA seq
675 aa
AA seq
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MEKVAHRSHLGQLFLWLLMIVELSLFYSACSAEIPVRKILNLGDCNPHVRLQKSHHNVVI
DNGLIEVTIENPSGHVTGIKYMGMDNVLECGNPNSNRGYWDFVWDNSTFDKMETKHVKVI
AHTDELVEISFTKNWDFRTDHGKTVPLNIDKRFIVRRGVPRVYMYGIFERQEDFPDAQMY
QLRIVFKLKEDKFRFMAISDTRQGVMPRGEDRDNTRSQTLAFKEAVLMINPSNPQFRGEV
DDKYQYSCENKDNKLHGWISDDDAVGFWIITPSNEFRTGGPHKQDLTSHVGPIALSMFVS
THYTGIDIDVTYKKGEAWRKAFGPVLIYLNSASSDDDCRKTLWNDAKRQLSEEIESWPYN
FTRSEDLPHAGDRGEVCGQLLVRDRCVDEELMQAQSAFVGLAVPGNVGSWQTEGKGYQFW
TETDYTGRFNIKNVRPGEYNLYAWVHGFIGDYKLDLNITIQPGNKVNLGTLIYDPPRNGH
TLWEIGIPDRTAAEFFIPEPDPTFVNPLCLDAADKFRQYGLWDRYSDIYRHGDVVYTVGV
SDYSRDWFFAHVLRNTGNITDLSTTTWQIKYNLQDVNEKGNYTLQLALAAASYAELQIRF
NNLDAIQPCFTTTRIGYDNAVARHGIHGLYRLYSINIPGNRFIRGNNTIFLTQSRSHALF
DAVMYDYIRLEGPAV
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtggcacacaggagccatttgggacagctttttctatggcttctaatgata
gttgaactgtcactcttttactctgcatgttctgctgaaatcccagtcagaaaaatcctg
aaccttggagattgtaaccctcatgtccggttgcaaaaaagtcatcacaacgtggttatt
gataatggacttattgaagtcactattgagaacccatctggtcatgtgacaggaataaaa
tatatggggatggataatgtgcttgaatgtggaaacccaaactctaatagagggtactgg
gactttgtctgggataacagcacctttgacaaaatggaaacaaaacatgtgaaggtcata
gcacatactgatgagctagtggagatttcctttaccaaaaattgggatttcagaacagac
catggcaagacagttcccttaaacattgacaaaaggttcatagtccgacgaggcgttcca
agggtatacatgtatggtattttcgagcgccaggaggattttccggatgcacagatgtat
caattaagaattgttttcaagctcaaggaagacaagtttaggttcatggcgatatcggac
accagacaaggggttatgcctaggggagaagatcgagataatactcgcagtcagactctt
gccttcaaggaagctgttctaatgatcaatccatccaatccacaatttagaggagaggtt
gatgacaagtaccaatattcatgtgaaaacaaagataacaagcttcacgggtggatatcc
gatgacgatgcggtgggtttctggataatcacccctagcaatgaattccgaactggtggt
ccacacaagcaagacctcacttctcatgttggtcccatagctctctctatgtttgttagt
acacattataccgggatcgacatagatgtaacatataagaaaggagaggcttggagaaaa
gcttttggtccagttcttatctatcttaattctgcttcttcggatgatgattgccgcaaa
acactctggaatgacgctaaaagacagttgagtgaagaaatcgaaagctggccatacaat
ttcacccgatcagaagatcttcctcacgctggagatcgaggagaagtttgcggtcaatta
ctagtacgagacagatgcgtggatgaggaattaatgcaggcgcaatctgcctttgtgggg
ttggcagtgcctggaaatgtaggctcatggcaaacggaaggaaagggctatcaattttgg
accgaaacagactacactggccgtttcaatattaaaaatgtccggccaggggagtataat
ttgtacgcgtgggtccatggtttcattggagactacaaattggatctcaacatcaccata
caaccaggaaacaaggtcaacctgggtaccctcatatatgatcctccaagaaacggccat
acattgtgggaaatcgggattcctgaccggacggctgctgagttcttcataccggaaccc
gacccaacatttgtaaacccattgtgcctcgatgccgccgataaattcagacagtacgga
ttgtgggatcgctactcagatatttatcgtcacggtgatgtcgtctacactgtgggcgtc
agcgattattctcgggattggttctttgctcatgttctcagaaatacagggaatattacc
gacttgtcaacaaccacatggcagattaaatacaatctccaagatgttaacgagaaagga
aactacactctccaactagccttggcagcagcttcgtatgctgaattacagattcggttc
aacaatctagatgctattcaaccttgttttacgacaacaagaattggttacgataatgcc
gtagcaaggcatggaatccatggcttgtacagactgtatagtattaatatacctggtaat
agatttataagagggaacaacacgatctttctaactcagtcaagaagccatgccttattc
gacgcagttatgtacgactatattcgattagaaggtcctgcagtttaa
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