Gossypium hirsutum (upland cotton): 107912671
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Entry
107912671 CDS
T04793
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107912671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107912671
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107912671
mRNA degradation factors
5'-3' decay
Decapping complex
107912671
SSDB
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NCBI-GeneID:
107912671
NCBI-ProteinID:
XP_016696451
UniProt:
A0A1U8K1M4
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Position
D11:complement(17443569..17451196)
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AA seq
802 aa
AA seq
DB search
MDRSDGKLHNNFSSLSSSVSGFADNALFDASQYEFFGQNAMEEVELGGLEDDEQDAPVFA
SPEDDEYHLFDKGEVVGLGSLSDVDDLATTFAKLNRVVTGPRNPGVIGDRSGSFSRESSS
AADWAQDGEYVNWMDQHLFDADDAQDGKRWSSQPQPYARVSDSKPLYRTSSYPEQQPQLH
RFSSEPIFGPKSNFISFPPPGSKCQQSSPARLNISALSSGSQPPFSAASLSPLSNPSLHL
AGLSHGLHCGGNVPQLTSPGLSFSSRSHNHWVNHSGLLHGDHAGLLHNMLQQQIPHQNGL
ISPQLMSPQQQRLHHSVQPSLAHFAALQSQLYNAHPPSHKLMLGLGDLRDQRTKSSQRKR
QSSRISQQNSDTGSQKSESGLVQFRSKYMSAEEIESILKMQHAATHSNDPYVDDYYHQAC
LAKRSFGSRGKHNFCPSHLKDLHSRSRNSGEQHLHLHADALGKAPLSSIRRPRPLLEVDP
PLGSGDGGSEQKTERPLEEEPMLAARITIEDGLSLLLDVDDIDRLIQFSQPQDGGIQLRR
RRQILLEGMAASLQLVDPLSKGAHAVKCVAKDDIVFLRLVSLAKGRKLVTRFLQLLIPGS
ELVRVVCMAIFRHLRFLFGGLSSDLEAAETTTNLAKTVSTCVNGMDLRALSACLVAIVCS
SEQPPLRPLGSPAGDGASVILKSVLERATQLLSYPSGNCSMPNYAFWRASFDEFFTLLTK
YCVNKYETIKQSIQNQSPTMEVIGSEAMRQEMPCELLRSSLPHTNEAQRKLLMDFSQRSV
PMNGANSHAGSTSQINSESVRG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatcgatccgatggcaaacttcacaacaacttctcctccttatcttcctcagttagt
ggttttgcagataatgcgctttttgatgcatcccagtatgaattttttggtcaaaatgct
atggaagaagtggagttggggggtctagaagacgatgaacaggatgctcctgtgtttgct
tcccctgaagatgatgagtaccatttgtttgataagggagaggtagtaggtttaggctct
ttatcagatgtggatgatctagctactacttttgcaaagttgaatagagttgttactggg
ccgagaaatccaggagttattggtgatagatctggatctttttcaagggaaagttcctct
gctgctgactgggcccaagatggagaatacgtaaactggatggatcagcatctttttgat
gcagatgatgctcaagacggcaagagatggtcttcgcagccacaaccatatgctcgtgtt
tctgactcaaagcctttgtatagaacttcttcatatcccgagcagcaaccccagctgcat
cgtttctcaagtgaaccaatttttgggccaaaatcgaacttcatatctttccctcctcct
ggtagcaaatgccagcagtcttcacctgcccgcctcaatatttctgctctttccagtgga
tctcagccacccttctctgcagcaagcctctctccattgtccaaccccagtcttcatctg
gctggtttatcccatggattgcattgtggtggtaatgtgccccagttaacatctcctgga
ctatcttttagtagcaggtcacataatcactgggttaaccactccggtctattacatgga
gatcatgctggtcttttgcataatatgttgcaacagcaaatacctcatcaaaatggtcta
atttccccacagttaatgtcaccacaacagcagagactgcaccattcggttcaaccatct
ttggctcattttgcagctttgcaatctcagctgtataatgctcaccctccatcacataaa
ttgatgcttggactaggcgatcttagggatcaacgaactaaatcatcacaaagaaagaga
cagagctcacgtatttcccagcaaaactctgatactggtagccagaaaagtgagagtggg
ttggtgcaattcagatccaagtatatgtctgctgaagagatagagagcattcttaagatg
cagcatgctgccacacatagtaatgatccttatgtagatgattattaccaccaagcttgt
cttgccaaaagatcttttggatccaggggtaaacataatttttgtccatctcacctgaag
gatttacattctcgatcccgtaacagcggagagcagcatttgcatctacatgctgatgca
cttgggaaggcccccctctcttccattcgaagacctcgtcccctgcttgaagtcgatcct
cccttaggttcaggtgatggaggttctgaacagaaaactgagaggcctttagaggaggaa
cctatgcttgcagctagaatcaccattgaagatggtctgtctcttcttcttgatgtagat
gacattgaccggctcatacaatttagccaaccccaagatggtgggatccagcttagacgg
aggcggcagatcctgcttgaaggcatggcagcatcgctgcagcttgttgatccacttagc
aaaggtgcgcatgcagttaaatgtgttgcgaaagatgacattgtgttcctaagattagtc
tctcttgcaaagggccgtaagctggtcaccaggttccttcagcttcttatccctggaagt
gagcttgttcgagtagtgtgcatggcaattttccgtcacttgagattcttgtttggtggt
ctttcctctgatctggaagcagctgagacaactactaatcttgcaaagactgtttctaca
tgtgttaatggtatggatcttcgtgctctcagcgcttgccttgtagcaattgtttgttct
tcagagcagccaccacttaggcccctgggaagccctgctggggatggtgcttctgttatt
ctaaaatcagttcttgaaagggccactcaacttttaagttatccttctggaaattgcagc
atgccaaattatgctttctggagggcgtcatttgatgaatttttcactcttcttaccaag
tattgtgtgaataaatatgagacgatcaagcaatcaatacagaaccagtctccaacaatg
gaagtgattggttcagaggctatgaggcaagaaatgccttgtgagcttcttcgttctagt
cttcctcacacaaatgaagctcagaggaagcttttaatggacttttcccagcgttctgta
cccatgaatggagccaattcccatgctgggagtaccagccaaataaactctgaatcagtg
aggggttaa
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