KEGG   Gossypium hirsutum (upland cotton): 107912780
Entry
107912780         CDS       T04793                                 
Name
(RefSeq) splicing factor U2af small subunit B
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107912780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107912780
Spliceosome [BR:ghi03041]
 Complex A
  U2 snRNP components
   U2 related factors
    107912780
 Complex B
    107912780
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4
Other DBs
NCBI-GeneID: 107912780
NCBI-ProteinID: XP_016696593
UniProt: A0A1U8K288
LinkDB
Position
A09:64591627..64595726
AA seq 314 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP
GVDAQGNPIDPRKIQQHFEAFYEDLFEELSKYGQIESLNICDNLADHMVGNVYVQFREEE
HAANAVKNLSGRFYAARPIIVDFSPVTDFREATCRQYDENTCSRGGYCNFMHLKRISREL
RRQLFGRSKRRRSHSRSRSPNRRRSSHDERPHGSRDHSRRYNDRDNYHESRSRRRRSTSP
GHRRGRSRSPGGKRNHSPIREGSEERRAKIEQWNREREQQENANNFEKDAANNNNENGSN
EYLRNDDKNYQQQE
NT seq 945 nt   +upstreamnt  +downstreamnt
atggcggagcatttggcgtcgatatttgggactgaaaaggacagagtgaactgccccttc
tatttcaagataggcgcgtgccgtcatggggatcgctgctcgcgtctccacaccaagccc
agcatcagccctactatccttctctccaacatgtaccaacggccggacatgatcaccccg
ggcgtcgacgcccagggtaaccccatcgatccccgcaagatccaacaacattttgaggct
ttttatgaggatttgtttgaggagttgagcaagtacggtcaaattgagagtttgaacata
tgtgataacttggctgaccatatggtaggcaatgtgtatgttcagtttagagaggaagaa
cacgctgcaaatgcagtaaagaatcttagcggaagattttatgctgcccgtcctatcatt
gttgacttctcacctgtgacggacttccgagaggccacctgtaggcagtatgatgagaat
acttgcagtcgtggtggatactgcaattttatgcaccttaaaagaataagcagggagttg
aggcgccagttatttggaaggtcaaaaaggaggcgaagtcatagccgaagcagaagccct
aaccggcgtcgtagtagccatgatgagcgccctcatggttcacgtgaccatagtagacgg
tacaatgatagggataattatcacgaaagccggagcagaagacgcagaagcacaagtcct
ggtcatcggagaggtcggagcagaagccctgggggaaagaggaatcatagcccaatccgt
gaaggcagtgaggagagacgtgctaaaattgagcaatggaatcgtgaaagggagcaacag
gaaaatgcaaataattttgagaaagacgctgccaataataacaacgagaatggtagcaat
gaatatttgcggaatgatgataagaactatcagcaacaggagtag

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