Gossypium hirsutum (upland cotton): 107912813
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Entry
107912813 CDS
T04793
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease 2 isoform X1
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107912813
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
107912813
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
107912813
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-GeneID:
107912813
NCBI-ProteinID:
XP_016696641
UniProt:
A0A1U8K261
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Position
D11:complement(20672663..20676061)
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AA seq
639 aa
AA seq
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MKIVTYNVNGLRQRVSQFGSLLKLLNSFDADIICIQETKLRRQELSADLAIADGYESFFS
CTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEAASAVAEGL
VEFSREELLKVDSEGRCIITDHGHFVLFNLYGPRAGDGDSERIQFKLNFFKILEKRWESL
LCRGRRIFVVGDLNIAPSAIDRCEAGPDFEKNEFRTWFRSMLVESGGHFFDVFRAKNPNR
REAFTCWPSNTGAEQFNYGTRIDHILCAGPCLHEEHDVEGHNLVTCHVKECAILTEYKQW
KPGSATRWKGGWNIKLEGSDHAPVYTCLREIPDVSEHSTPSLAARYLPMVHSLQQTLVSV
LMRRQATKQVKSDVVSSSFPDECIISGGCSHVKRSIANCDVNGTDISCRSLDQDSRNPIL
KVVGHSEDFKEEAACSTTIVFNEEYARPLPNKRTRKRARKSQQLSLRSFFQKSQNLDDGI
ENSTNDISTSQTGVLNSNNQSQEAPVMDDHRCGTMQNDTNGISSSQGQEEPDRPCSPTQN
NTNGNASSQGQEEQDGSRYLEKQKKSDALLEWRRIQQLMQNSIPLCKGHREPCVSRVVKK
PGPNFGHRFYVCARAEGPSSNPEANCGYFRWASTKSRPK
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagtaacttacaacgtaaatggactgaggcaaagagtctcacagttcggttct
ctccttaaattactcaattcctttgatgctgatattatctgcatccaggagacgaaattg
agaagacaagaattatcggcggatttggcaatagccgatggctatgaatccttcttttcc
tgcactcgtacctccgacaaaggccgaactgggtactccggtgtggcgacattttgtcgt
gttaagtcggcgttctccagtgtagaagcggcgttgccgattgcggcggaggaaggcttc
acgggtctcctaggttgttctagaaaagacgaagcagcttcagcagtagctgaagggctt
gtggagttttcaagagaggagcttctcaaagttgatagtgaggggcggtgcattatcaca
gatcatggtcatttcgttcttttcaatttgtatggaccccgagcaggggacggtgattct
gagagaatacagttcaagctcaactttttcaagatattagagaaaagatgggagtctctg
ttgtgtcgaggaaggaggatttttgttgttggtgacctcaacattgctccttctgctatt
gatcgttgtgaagctggaccagattttgagaagaatgagtttagaacatggtttagatca
atgctagtggaatctggaggccatttctttgatgttttcagggcaaaaaatccaaacaga
agagaagcatttacatgctggccttcaaatactggtgctgagcaattcaattatgggaca
agaattgatcatattctatgtgctgggccttgcttacatgaggagcacgatgtagaggga
cataatttggtaacctgccatgtgaaggagtgtgccatcttgacagaatacaagcagtgg
aagcctggaagtgcaacaaggtggaaaggagggtggaacattaagttagaaggttcggac
catgcacctgtttatacgtgcttaagggaaatccctgatgtctcagaacatagcactcca
tccttagctgctagatatctgccaatggttcatagtctgcagcaaactcttgtgtcagtt
ttaatgagaaggcaagctactaagcaagtcaaatccgatgtagtatcaagttcatttcct
gatgaatgtatcatctcaggaggttgcagtcatgtaaaaaggtctatagctaattgtgat
gttaatggaaccgatatatcctgccgttctttggaccaggactcccgaaaccccatccta
aaagttgttggtcattctgaagatttcaaagaggaggcagcttgtagcactaccattgta
ttcaacgaggagtacgccaggccattgcctaacaaacgaaccaggaaaagagctagaaag
agtcaacagctctccttgagatcatttttccagaaaagtcaaaacctagatgatggcatc
gagaattctacaaatgatatttcaactagccagactggtgtcctaaactctaacaatcag
tcccaggaagctcctgtgatggatgatcatagatgcggtaccatgcagaatgatacaaat
ggaatttcatcctcacagggtcaagaagaaccagatcgtccatgtagtccaacgcaaaac
aacacaaatgggaatgcatcctcacagggtcaagaagaacaagatggtagtcgttatttg
gagaaacagaagaagagtgatgcattattggagtggcgaaggatccaacaactcatgcaa
aacagcatacctctttgcaagggccatagagaaccttgtgtttctcgagtagtgaagaaa
ccaggtcctaattttggtcataggttctatgtgtgcgctcgagctgagggtccttcttcc
aaccctgaagcaaattgtggttacttcagatgggcttctacgaagtcacggccaaaatga
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