Gossypium hirsutum (upland cotton): 107913233
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Entry
107913233 CDS
T04793
Name
(RefSeq) probable E3 ubiquitin-protein ligase HIP1 isoform X2
KO
K22753
E3 ubiquitin-protein ligase RNF6 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107913233
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107913233
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107913233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-RING_5
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
107913233
NCBI-ProteinID:
XP_016697243
UniProt:
A0A1U8K8E7
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All DBs
Position
D11:complement(25424565..25429788)
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AA seq
651 aa
AA seq
DB search
MQGQGSGSNSFPSGNFYSNGHLRSGHRNVVPDALVHDRDGHTSMRWIGQPNSSLDTQNHA
GFSQFLGDDFGFSPLGDQVGMNQRSVPTINPFLENNSGIAGNGHNSSENGSIGSSLFPRR
EAGSGLLQQQRNLDLNAVVHEGRRFDAGQGNGPYLSLDLFRAGTRTTAGDHDRIQTFGGS
SSNLAMTYSGIARYILEENRIRDGLPANGQTRLLCKRKALEYATGGSSSSARQAANSHQP
GTNIGQHNVRNYLSAVNSFNSGHSRHGAASPIPSNFYQVSTEVRQADNFGRNTRLRRTAS
QPVPTSANLQAWNSINSNAQPTSQCPVTLTSLAPAPVLANPAMQHQTMQVSNSLQAPLPS
RYWNGTTMSRVGPSISRYQTLLRQKNNLRNNRRNMMISLANMQANLNLANENSNFIGNVA
SSSRIQSGPGMHLPYSSIRSPHPNMVEQYRQRLQHISNPSDPWRQGNNNTIHSGASLVVQ
DMDVSVRDGNPRRAQLPLRLVPRAEGQAGHNYRLSLTEQSQTAAQRSRPISEVRNALGHV
RRHGGLRPEMRLDVDNMSNEELQNLEEQIGNFGTGLSEEAILGNLRRQKYQSITMGPPAE
TEPCCICQEDYANGEELGKLDCGHDFHFSCIKQWLVQKNSCPICKKTALAI
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtcaaggcagcggctccaattctttcccttccggaaacttttactccaatggt
catcttagatctggtcatcgtaatgtggttccagatgctttagttcatgacagagacgga
catacttccatgagatggattggtcaacccaattctagtcttgatacccaaaatcatgct
ggctttagtcaattcttgggtgatgactttgggttttctcctctaggtgatcaagttggc
atgaaccaaaggtctgtgccaaccattaacccttttctagaaaataatagcggcatcgcc
ggtaatggtcataacagtagtgaaaatggttcgatcggctcatcgttatttccaaggcga
gaggctggttctggtcttctacaacaacaacgtaacttagacctgaatgctgtggtacat
gaaggaagaagattcgatgcaggtcagggtaatggaccatacttatcattagaccttttt
agagctggaacaagaacaacggcaggagatcatgatcgcattcagaccttcggcggttct
tcttctaacctagccatgacttactcaggaatagcgagatatattctagaagaaaataga
atcagagatggccttccagccaatggtcaaacaaggcttttatgcaaaagaaaggcgctt
gaatatgctactggtggtagttcaagctccgcacggcaagctgccaattctcaccaacca
gggactaatattggccaacataatgttaggaactacttgagtgcagttaattccttcaat
agtggtcattcaagacatggggctgcttcgccgataccctctaacttctatcaagtttca
acagaagttaggcaagctgacaactttggaagaaatactcgtttgagaaggactgcaagt
caaccggttcccacatcagcaaacttgcaggcgtggaactcaatcaattctaatgcacaa
cctacaagtcaatgccccgttacccttacaagcttagcaccagcgccagttctagcaaat
ccagccatgcagcatcagactatgcaagtctccaactcgttgcaagctccgctaccttct
cgatattggaacgggacaaccatgtcaagggttggtccttccatctctcgttatcagacc
ttattgcgacagaaaaacaacttaagaaacaatagaaggaatatgatgatttctttggcg
aacatgcaagcaaacctcaacttggccaatgagaactcaaacttcattggaaacgtagcc
tcctcttccaggatccaatccggccctggcatgcatctaccgtattcatccataaggtcc
cctcatccaaatatggttgaacaatacagacaaagattgcaacatatttccaatccatca
gacccctggaggcaggggaataacaatacgatacattctggtgcttccctagttgttcaa
gacatggacgtttcagtgagagacggcaatcctaggcgtgctcagcttcctctgaggttg
gtaccaagagctgagggacaagctggtcataattataggctatcattgacagaacaatct
caaactgctgctcaaagaagtaggccgatatctgaggttcgcaatgccttgggacatgta
cgtaggcatggtggcttacgacctgagatgcgccttgatgttgataatatgtctaatgag
gaactacagaatctggaggagcaaattgggaactttggcactgggctaagcgaggaagct
attctggggaatctgagaaggcaaaaatatcagtccataacaatgggacccccagcagaa
actgaaccctgctgtatttgtcaggaggattatgctaatggcgaagagcttggtaagctg
gactgtggtcatgactttcacttcagttgcattaagcaatggctggtgcagaagaattca
tgccccatatgcaaaaagacagctttggctatttga
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