Gossypium hirsutum (upland cotton): 107913247
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Entry
107913247 CDS
T04793
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107913247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107913247
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107913247
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_6
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
107913247
NCBI-ProteinID:
XP_016697262
UniProt:
A0A1U8K468
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Position
D08:11611544..11614940
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AA seq
586 aa
AA seq
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MHKKMAFSFPDEVLEHVFSFIQSDKDRNAVSMVCKSWYEIERWCRRKVFVGNCYAVSPRM
VIRRFPEFRSIELKGKPHFADFNLVPDGWGGYVSPWIEEMAGAYPWLEEIRLKRMVVTDE
SLELIAKSFKNFKVLVLSSCEGFSTDGLAVIAASCKNLKELDLRDCEVDDLSAHWLSHFP
ETYTSLVSLNISCLGSDEVSFSALERLVGRCTNLKTLRLNRAVPLDKIANILRHAPQLVE
FGTGTYTADVRPDVYSDLAGVFSSCKELKSLSGFWDVVPDYLPAIYPVCSKLTSLNLSYA
TIQSPDLIKLVSHCPNLQRLLVLDYIEDSGLEVLASSCKDLQELRVFPSDPFGAEPNVSL
TEQGLVAVSLGCPKLQSVLYFCRRMSNEALVTIARNRPNFTRFRLCIIEPKTADYLTLEP
LDVGFGAIVQYCKDLKRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSG
CESLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCAVSFAACKLLGQKMPRLNVEVID
ERGPPDSRPENCPVDKLYIYRSIAGPRFDMPPFVWTMDEDSGLRLS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgcataagaaaatggcgttttcgttcccagacgaggtgctggagcatgtgttctcattc
atacaatcagataaagaccggaacgcggtgtcgatggtgtgtaaatcgtggtacgagatc
gagcgttggtgtcggaggaaagtgtttgtggggaactgttacgctgtgagcccgaggatg
gtgatcagacggttccccgagtttagatccattgagttgaaagggaaaccgcactttgcg
gatttcaatctggtgccggacggatggggaggttacgtgtctccctggatcgaggagatg
gctggagcttatccttggctcgaagagattcgacttaaaaggatggtcgttaccgacgaa
agcttggagcttattgctaagtcgtttaagaacttcaaagtgttggtgctttcttcttgt
gaagggttttcaactgatggtctcgctgtcattgctgctagctgcaagaatctgaaagag
ctggacttgcgagactgtgaagtggatgatttgagtgcgcattggctcagtcattttccc
gaaacatacacatcactggtgtcccttaacatttcttgcttagggtctgatgaagttagt
ttttcagcgttggaacgcctggtgggtagatgtactaacctcaagactctccggctcaac
cgtgcagtgcccctggataagattgccaacattttacgtcatgcaccgcagctggttgaa
ttcggtactggcacctacacggctgatgtacggccagatgtctactcagatttggccgga
gtgttttctagttgcaaggaactaaagagcttgtctggattttgggatgtggtcccggat
taccttcctgccatttaccctgtctgctcaaaattaacatcactgaacctgagctatgct
actatacaaagtcctgatcttatcaagcttgtaagccactgtccgaatttgcagcgccta
ttggtacttgattacattgaagatagtgggcttgaggtgcttgcatctagttgcaaggac
ttgcaggaattacgtgtgtttccatctgatccatttggtgcagagccaaatgtgtccttg
acagaacagggccttgttgccgtatctttgggttgtcccaagctacaatcagtattgtac
ttctgccgccgaatgtctaatgaggcattagttactattgctcggaaccgtccaaacttc
acaaggtttcgcctttgtataattgagcctaaaacagctgattacctgactctcgagcca
cttgatgttggttttggagccattgttcagtactgcaaggatctcaagcgtctttccctc
tctggtcttcttacagatcgtgtattcgaatatattgggacatacgcgaagaagcttgag
atgctgtctgtggcttttgcaggagatagtgatttgggactacatcatgtgctttccggg
tgtgaaagccttcggaaactggagatcagagattgcccctttggtgacaaggctcttttg
gccaatgctgcaaagctggagacaatgcgatccctttggatgtcttcttgcgctgtgagc
ttcgcagcatgtaagctgctaggtcagaagatgccaaggttgaatgttgaagttatagat
gagaggggacctcctgattcaagaccagagaactgcccagttgataagctctacatatat
aggtccattgcagggccaaggttcgacatgcctccttttgtttggacaatggatgaagat
tctggattgaggctttcatga
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