Gossypium hirsutum (upland cotton): 107913417
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Entry
107913417 CDS
T04793
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107913417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107913417
03036 Chromosome and associated proteins [BR:
ghi03036
]
107913417
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107913417
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107913417
PBAF complex
107913417
GBAF(ncBAF) complex
107913417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
107913417
NCBI-ProteinID:
XP_016697480
UniProt:
A0A1U8K4P1
LinkDB
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Position
D12:54274832..54278178
Genome browser
AA seq
524 aa
AA seq
DB search
MNNTNIPKNFGAPSQFGNSGTVPKSQSIPMNNQPQTQGGPQFPGHFQLSEPQAQVLARAQ
YVQAQPPAHSQFPAQVQSQSGSNSTATTTHSPLVSTPGSGGVKRSSQKPPSKNSGSSHSN
MASLFKTMELTPAVLRKKRKHPERQIPDKVAAILPECALYTQLLEFEAKVDAALSRKKTD
IQQSIKNPPCVQKTLRLYVFNTYANQGQTDPDKKSTEAPSWSLKIIGRVLEDGKDPVLAG
KVQKSYPKFSSFFKKITVYMDASLYPDNHVILWESARSPALHEGFELKRKGDKESTVRIR
LEMNHRPERFKLSPALAEVLGIEVDTRPRILAAIWHYVKSKKLQNYEDNSFFSCDPPLQK
VFGEEKMKFIMVSQKISQHLTPLPPIHLEHRIKLSGNCPVGSTCYDVLVDVPYPLETEKS
AFLSDMEKNKDIDACDEVICTSIKKIHEHCRRRAFFLGFSQSPAEFINALIASQGKDLKL
FAGEANHNAEKEQRSEFYNQPWIEDAVIRYLNRKSMGGDSLGST
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaataacactaacataccaaagaattttggggctccatcccagtttgggaattccggg
acggtgccaaaatcgcaatctattcccatgaacaatcaaccacagacacaaggtggtcct
cagtttccgggccactttcaattgtctgagcctcaagcacaggtgcttgcgcgggcacaa
tatgtgcaggctcagcctcctgctcattcccaattcccagctcaagtgcagtcacaaagc
ggtagtaatagtactgctacaaccacccattcccctttggtttccacccctggctcaggt
ggtgtcaagcggtcttctcagaagccaccttcaaaaaattccggttcatctcatagtaat
atggcttctctgtttaaaacaatggagttaaccccggctgttcttaggaaaaagcggaag
catcctgagagacaaatacctgataaggtggctgcaatcttaccagaatgcgctctatat
actcagttgcttgaatttgaggctaaggtcgatgctgctttgtcaagaaagaagaccgac
attcaacagtctattaaaaatcctccctgtgttcagaagactcttagactatatgttttc
aatacttatgccaatcagggacaaacagatcctgacaagaagagtaccgaggctccatca
tggtcacttaagattattggtagggttttggaagatgggaaagaccctgttctggctgga
aaggttcagaaatcatacccaaaattctcgtctttctttaagaaaattacagtatacatg
gatgcaagtctctatccagataaccatgtaatcttatgggagagtgctcgatcacctgcc
cttcatgagggttttgagttgaagaggaaaggagacaaggaatcaactgtgagaataaga
ctggaaatgaatcatcggcctgaaagatttaaactttctcctgctctagcagaagtcttg
ggaattgaagtagatacacgcccaagaatcttggctgcgatttggcattatgtgaagtca
aagaagttgcagaattatgaagacaattccttcttttcatgcgatccacctctgcagaag
gtattcggggaagaaaaaatgaaattcattatggtttcacaaaagatatcacagcattta
actcctctaccacctatacatttggaacataggatcaagctttcagggaactgtcctgtt
ggatccacttgctacgatgtcctggttgatgtgccttacccattagaaacggaaaagtct
gcatttttgtcagacatggaaaagaacaaagatattgatgcttgtgatgaagtgatttgt
acttctataaagaaaatacacgagcattgtcggagacgagctttcttccttggtttcagc
cagtctcctgcagagtttattaatgctttgatagcttctcaaggcaaggatttgaagctt
tttgctggagaagctaaccataatgctgaaaaggagcagcgatctgaattctataaccaa
ccatggattgaagatgctgtaatccgttacctgaatcgcaagtctatgggaggggattct
cttggaagcacttga
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