Gossypium hirsutum (upland cotton): 107913549
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Entry
107913549 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X2
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107913549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107913549
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107913549
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
107913549
NCBI-ProteinID:
XP_016697665
UniProt:
A0A1U8K575
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Position
A13:complement(3838099..3850427)
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AA seq
982 aa
AA seq
DB search
MEPPLPFLSTNYGRSNEFNSMTCKRKKMSTDTKEYDSVSATGNPLDGTEKKKHKVSPNVI
DYADPFAYTNMLESLNTGGKYGSVTKDIEALFSRNANMMSKILASQPCLSSVLVDVIKRS
PRKETSNVPSRLLPHLSRNFINLEDESVGNGIKTAMLPVLVLDSDDEVNKNPRPLHLFQE
IVLSKPSKKLLSKEKTEIVSKPSEGLLSKEKMEIEWRKSSEKLLHKEKMETVSRKKPSGK
LLPKEKMETVSRKKPTEKLIPKEKMETISRKPSEKLFPKEKMVGESKSKKTDLKENVSLT
SETDLKDEGVYVGVEEDVDTLTENIDDGLGDIWQEMSMALEFSKDGLEELPGESMSEDED
CDHSFVLKDDLGYVCRICGVIERGIETIIEIQYNKAKKSTRTYAVEPRNGRESSETVGFK
LSEDHLTVTDIAAHPRHMKQMKPHQLEGFNFLLNNLVTDNPGGCILAHAPGSGKTFMIIS
FMQSFLAKYPHAKPLVVLPKGILATWKKEFQTWQVEDIQLLDFYTVKADNRSQQLDVLKQ
WVERKSILFLGYKQFSTIICDSGNGKTSITCQEILLKAPSILILDEGHTPRNENTDVLQS
LAKVQTTRKVVLSGTLYQNHVKEVFNILNLVRPKFLRSDTSKSIIKRVMSKVHISGVRKQ
FKGGAEAAFYDLVEHTLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTV
VLGLSPTQMDEVPKLKRYQRKFKVSSVGSAVYLHPKLASFSEKSDTTDDKIDAKIDDLLD
KLDIREGAKAKFFLNLLNLCESAGEKLLIFSQYLIPLKFLERLAVKLKGWQPGTEIFSIT
GESSTDHREWSTDHFNNSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIG
RAFRPGQKKKVYVYRLIAGDSPEEEDHSTCFKKELIAKMWFEWNKYCGNRDFDMETVNVN
ECNDLFLESHLLREDIRLLYRR
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcccttgccgtttttgtctacaaattatgggaggtcaaacgagtttaattct
atgacttgtaaaaggaagaaaatgtcaactgatacaaaagaatatgatagcgtgtcagca
actggaaatcctttggatggaactgaaaagaaaaaacataaggtgtctccaaatgttatt
gattatgccgacccatttgcatatactaatatgcttgagtcccttaacactggcggtaaa
tatggaagtgtcacaaaggatatagaagcccttttttctaggaatgcgaatatgatgagc
aagatacttgcttcgcaaccttgtctttcgagtgtgttagtagatgtgataaaaagaagc
ccgaggaaagagacttcaaacgtgccgagtagactacttcctcatttgtcaaggaatttc
atcaacttggaggatgagtcagtcggaaatggtatcaaaacggccatgttgcctgtactg
gttctggattcagatgatgaagtcaacaaaaatccaaggcctctgcatctttttcaggaa
attgtattgagcaaaccatctaagaagttactctccaaggagaaaacggaaattgtatcg
aagccatctgagggattactctccaaggagaaaatggaaattgaatggaggaagtcatct
gagaaattactccacaaggagaaaatggaaaccgtatcgaggaagaaaccatctgggaaa
ttactccccaaggagaaaatggaaactgtatcgaggaagaagccaactgagaaattaatc
cccaaggagaaaatggaaactatatcaaggaagccatctgagaaattattccccaaggaa
aaaatggttggggagtccaagagtaaaaaaactgacctgaaagaaaatgttagtctaacc
agtgaaactgatctcaaggatgaaggtgtttatgttggagtcgaagaagatgtagatact
ctaactgagaacatagatgatggtttgggagatatttggcaggagatgtcaatggcatta
gagttttccaaggatggtcttgaggaacttccaggtgaaagcatgtcagaagacgaggac
tgtgaccattcttttgtcttgaaggatgatcttggttatgtgtgtcgcatatgtggggtt
attgagagaggaattgagactataattgagatccagtataacaaggcaaaaaaaagcaca
cgcacatatgcagtagagccacggaatggcagagagtcgtctgagactgttggatttaag
ttgtctgaagatcatttaacagtaacggacatagctgctcatccaaggcatatgaagcaa
atgaaacctcaccaattagagggttttaattttctactgaacaatttggtaacagataac
cctggcggctgcatcttggctcatgcacctggatcaggaaagacgtttatgataatcagc
ttcatgcaaagtttcctagccaaatatccacatgctaaaccgctagtcgttcttccaaaa
ggtatcttggctacatggaaaaaggagttccagacatggcaagtagaggatattcaacta
ctcgatttttatactgtgaaagctgataatagatctcagcagttggacgtgttgaagcag
tgggttgagagaaagagtatcctttttctggggtacaagcagttctctaccataatttgt
gacagtggaaacggaaagacttctattacttgccaagagatactgctcaaagcaccttca
attctaattttggatgaagggcacacaccaagaaatgaaaacaccgatgtgttacaatcc
cttgcaaaagttcaaacaactcggaaagttgtactttcaggaactctctatcaaaatcat
gtcaaggaggtatttaacatattgaaccttgttcgaccaaagttccttaggtcagacaca
tcgaaatcaataattaagcgggtaatgagtaaggtgcatatatctggagtgagaaagcag
ttcaaaggtggagcagaggcagctttctatgatttggtggagcacacattgcagaaggat
gaaaactttgagaggaaagtctcagtcatacatgatctacgtgagatgaccagcaaagtt
cttcattattacaaaggagattttctggatgagcttcctggacttgttgatttcactgtt
gtacttggtcttagtcccacacagatggatgaagttccgaagttaaaaaggtatcaaagg
aagttcaaggtttcatctgttggtagtgctgtttatttacatccaaaactagcttctttc
tctgagaagtctgacacgactgatgataagatagatgccaagatcgatgacttgttagac
aaattagatatcagagaaggagccaaagcaaaattctttcttaatttgttaaatttatgt
gagtcagccggtgagaagctccttatttttagtcaatatctcatccccttgaaatttttg
gagagattagctgtgaaattgaagggttggcaaccaggaactgagattttttcaatcacg
ggtgagtcaagtactgatcatcgggagtggtctacggatcacttcaacaactctcctgat
gctagagttttcttcggttctattaaggcttgtggagagggaatttctttggtgggggcg
tcccgaattataatcttggatgttcatcttaatccatctgtgacccgccaagccattggc
cgtgcatttcgccctggccaaaagaagaaagtatatgtatacagattgattgcaggtgat
tctcctgaagaggaagaccattctacttgtttcaagaaggaattaattgcaaagatgtgg
tttgagtggaacaagtattgcggtaaccgagatttcgacatggaaactgtcaatgtgaat
gagtgcaatgatctctttctggaaagtcacttgttaagggaagatatcaggcttttgtac
agaaggtag
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