Gossypium hirsutum (upland cotton): 107913567
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Entry
107913567 CDS
T04793
Name
(RefSeq) RNA polymerase sigma factor sigA isoform X1
KO
K03086
RNA polymerase primary sigma factor
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107913567
Transcription machinery [BR:
ghi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
107913567
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
107913567
NCBI-ProteinID:
XP_016697690
UniProt:
A0A1U8K5A1
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Position
D11:complement(47930302..47934786)
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AA seq
535 aa
AA seq
DB search
MMATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYGSSYYQTPSTKTLMVAKRSSNCSQ
NLPSSNRHTQSIKAFKEHVDTASSISTVEPWIHGTNDLEQESYDLDYSVEALLLLQKSML
EKQWTLSFERTMFTESPSRKTHNKVPVTCSGVSARQRRFNTKRKILSQNKSMIQPNAKQL
RSLIGPELLQNRLKGYVKGVVSEDLLSHGEVVRLSKKIKAGLSLEEHRLRLKERLGCEPS
DEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGLI
GLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKYRL
EEKGITPTIDSLLYARSQVSYSLNEPSFKYLIPLYFQRIAESLNMSQKKVRNATEAVSKV
FSLDRDAFPSLNGLPGETHHSYIADNHVENNPWHGVDEWALKDEVNRLINITLGEREREI
IRLYHGLDKESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgatggccactgctgctgtgattggacttagcactggaaagagactcttgagctcttcc
ttttcttattcggaaaccgtagataagctgtcgtatgctggtgattatggatcttcatat
tatcaaactccttccacaaagactttaatggttgcaaaaagatcatctaattgtagccaa
aatcttccatcatccaatcggcacacgcagtcaattaaagcttttaaagagcatgtggat
actgcatccagtatttcaacagtagagccttggatccatggaaccaatgacttagaacaa
gaaagctatgatcttgactactctgtagaggctcttcttttgcttcagaagtctatgctg
gaaaagcaatggacactttcttttgagaggacgatgttcactgaatcaccaagtcgaaaa
actcacaacaaggtacctgttacatgttctggggtgtctgctcggcaacgaagattcaat
actaagaggaagattctgagccaaaataaatcaatgatacaacctaacgctaagcagcta
agatcattgatcgggccagagctgcttcaaaatcgcttgaaaggttatgtgaagggtgta
gtgagtgaagatttgcttagccatggggaagttgtgcgcttgtcaaagaaaatcaaagct
ggactttccttggaggagcacagattaagattgaaggagagactgggatgtgagccatct
gatgaacagcttgcaacttccttgaaagtttctcgtgctgagttacggtcaaggtcaatc
gaatgttctttggcaagagaaaaattggcaatgagcaacgttcgcttggttatgtcgata
gctcaaagatatgataacatgggtgctgaaatgtctgatcttattcagggtggtttgatc
ggactattgcgtggtatcgaaaaatttgattcttcaaagggatataaaatttcaacttat
gtgtactggtggatacgtcagggtgtttctagagcactggttgagaactcaagaacatta
agattgcctacatatttgcatgaaagattgggattaatccgaaatgcaaaatataggctg
gaggagaaaggaataacaccgactattgattctttactttatgcaaggagccaagtatct
tattctctcaacgaaccatcatttaagtatttgattcctttatactttcagaggattgct
gagagtctaaacatgtctcagaagaaagttaggaatgccacagaggcagtcagtaaggtc
ttctcccttgacagggatgcattcccgtctttgaatggtcttcctggagagactcaccat
agttacattgcagataaccatgtagaaaacaatccatggcatggagtagatgagtgggca
ctcaaggatgaagtgaacagactgatcaatataacgctcggagaacgagaaagggagatt
atacggctttatcatggtttggataaggaaagtcttacatgggaggacatcagtaaacgc
ataggtttatccagggagagagttaggcaagtcggactcgtggcgctggagaaactaaaa
cacgcagcgaggaagaagaaaatggaagccatgctagtcaaacattga
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