Gossypium hirsutum (upland cotton): 107913610
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Entry
107913610 CDS
T04793
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107913610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107913610
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107913610
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
107913610
Messenger RNA biogenesis [BR:
ghi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
107913610
Transfer RNA biogenesis [BR:
ghi03016
]
Prokaryotic type
tRNA degradation factors
107913610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
WHD_DUF6293
Motif
Other DBs
NCBI-GeneID:
107913610
NCBI-ProteinID:
XP_016697748
UniProt:
A0A1U8K9V8
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All DBs
Position
D11:51162763..51176989
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AA seq
941 aa
AA seq
DB search
MLANPSGVRSTACYAQPSHFAFSGRCKLLSSFPNRPRFLSPKKTSKFCSLSLLLSRNGVR
CNSFSVKALVEPEVSESVAAAAGGAGAGGSGLLPPVSVKIPFGDREILIETGHIGRQASG
SVMATDGETIVYTSVCLSDVPSEPSDFFPLNVTYQERFSAAGRTSGGFFKREGKTKDNEV
LICRMIDRPLRPTMLKGFYHETQLLSWVLSYDGLHCPDALAVTAAGIAVALSEVPHSEAI
AGVRIGLLGDKFVVNPTTKEMEGSTLDLFLAGTDNAILMIEGYCDFLPEEKLLEAVQVGQ
GAVRQICSAVKALVTKCGKPKMLDAIRLPPPELYRLVEKIAGDELHNVLQIKSKIPRRKA
ISLLEEKVINRLTDKGYISIEGLSGSGETILDLIDEEDEDEEIVVDGEVDEGDVHIKPVS
RKSTPLFTEVDVKLVFKEVSSKILRRRIVEGGKRSDGRSPEDIRPITSSCGLLPRAHGSA
LFTRGETQSLAVVTLGDKQMAQKLDNLANVEEFKRFYLQYSFPPSSVGEVGRMGAPSRRE
IGHGTLAERALEPILPTEDAFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPLKCS
IAGIAMGLVLDTHEFGGDGTPLILSDITGAEDASGDMDFKVAGNEDGITAFQMDIKVEGI
TLPVMREALLQARDGRRRILAEMMKCSPPPAKSLSKYAPLIHIMKVAPEKVNMIIGSGGK
KVKSIIEETGVEAIDTQDDGIVKITAKDLSSLEKSKSIISSLTMVPTVGDIYRNCEIKSI
VPYGVFVEIVPGREGLCHISELTSDWLAKAEDAFKVGDRVDVKLIEVNDKGQLRLSRRAL
LPVPETSPEDPSSNPDVVVIADSGKASDEGAPQKYVSVPKAEGLAEEKIDRAKVKSSATK
VASSSKSNSAETTLLPRKKVFKRVKKSGSKAVTGVSSNDGE
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaaaccctagcggcgtacgaagcacggcgtgttatgctcaaccttcgcatttc
gctttctccggccgttgcaaacttctttcatcttttccaaatcgccctcgctttcttagt
cccaaaaaaacctctaagttttgctctctctcactgcttttatcacgaaatggcgtcaga
tgtaacagcttttccgttaaagctttggtggagccggaagtttccgagtctgttgctgct
gctgccgggggagctggtgctggtggttctggtttactgccacctgtttctgtcaaaatt
ccctttggagatagagagattctgattgagacaggtcatatagggaggcaagctagtggt
tctgtgatggcaactgatggagaaacgattgtatacacatctgtttgtttgtcagatgtc
ccaagcgagccttctgattttttcccgcttaatgttacatatcaagaacgtttttcagca
gcaggtcgaactagtggtggtttctttaaacgcgaagggaagacaaaggacaatgaggtt
cttatttgtcggatgattgataggccattgcgcccaactatgcttaagggattctaccat
gaaactcagttactatcttgggttttgagttatgacggtttacactgtccagatgcttta
gcagttactgcagccggtatagcagtagcactctctgaagtgccacactcagaagctatc
gcaggagttcgaattggtttacttggtgataaatttgttgtaaatccaacaacaaaggag
atggaaggctcaacacttgacctatttttggcaggcacggataatgctatattaatgata
gagggctattgtgattttctacctgaagaaaagttgcttgaagcagtacaagtagggcag
ggtgcagtgagacaaatctgcagcgctgtgaaggctttggttacgaagtgtgggaaaccc
aaaatgcttgatgctatcagattgccacctcctgagctttatcggctcgtggaaaaaatt
gcaggtgacgaattgcataatgtacttcaaattaagagtaaaataccaagaagaaaggcc
atctcattgttagaagagaaagttattaacagactgacagataagggatatatcagcata
gagggcttatcaggatctggtgaaacaatactagacttaattgatgaggaggatgaggat
gaagaaattgttgttgatggtgaagtagatgaaggtgatgtgcacataaagccggtttct
cgaaaatccactcctttgtttactgaggtagatgtgaagctggtatttaaggaggtttca
tccaaaatcttacggagacgtattgtggagggaggaaaaagaagcgatgggaggtctcca
gaagatatacgtccaatcacttcaagctgtggattgcttccaagggcacatggaagtgct
ctctttacacgtggggagacacagtcgctggcagtggtcacacttggtgataaacaaatg
gcacaaaaactggacaatctagcaaatgtagaggaattcaagaggttctatcttcagtac
tcgtttcctccatcaagtgttggagaggtcggacggatgggagctcctagtagaagagaa
attggacatggaactcttgcagagagagctcttgagcctatattacctactgaagatgca
tttccttacactatacgagttgaaagtaccattactgaaagcaatggttcctcaagtatg
gcatctgtttgtggaggttgcttggcattgcaagatgctggtgttcccctaaaatgctct
attgctgggattgcgatgggtttggttttagacacacatgaatttggaggagatggtaca
ccacttattctttctgacattactggagctgaagatgcttctggagatatggatttcaag
gttgctggaaatgaagatggcataactgcatttcagatggacataaaggtagaagggata
accttacctgttatgagagaggcactcctacaggcaagggatgggcgcaggcgtattcta
gctgaaatgatgaaatgttcccctccccctgcaaaaagtctctcgaagtatgctccactt
attcatatcatgaaggttgctccagagaaagttaacatgattataggttctggtgggaaa
aaggtaaaaagcattattgaagaaactggagtagaagctattgacacgcaagatgatgga
attgtaaaaatcactgcaaaagatctgtcaagtctggagaagtccaaatccattattagc
agcctgacgatggttccaactgttggtgatatatacaggaactgtgagatcaaatcaata
gttccatatggggttttcgttgagatagttccagggcgagagggactttgccacattagt
gagctgacgtcagactggttggccaaggctgaagatgcttttaaagttggtgatcgtgtt
gatgttaaacttatcgaggtcaatgataagggacaacttcgccttagccgccgtgcactt
cttcctgttcctgaaacaagtccagaggatcccagttcaaacccagatgtggtggttatt
gctgattctggtaaagcatctgacgaaggtgcacctcaaaaatatgtgagtgtccccaaa
gcagagggtttagctgaagagaagattgatagggccaaggttaaaagtagtgctaccaaa
gttgcaagctcatccaaaagtaattctgcggagaccactctacttccacggaagaaggtt
tttaagagagtaaagaagagtggcagtaaagctgtcactggtgtctccagcaatgatggg
gagtag
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