Gossypium hirsutum (upland cotton): 107913697
Help
Entry
107913697 CDS
T04793
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107913697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107913697
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107913697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
107913697
NCBI-ProteinID:
XP_016697846
UniProt:
A0A1U8K5Q4
LinkDB
All DBs
Position
A11:complement(93593299..93601157)
Genome browser
AA seq
958 aa
AA seq
DB search
MLFLHYNPNTTMNDYDDQITMEAQSQPSENSQILQTLALGPLSSSLSSLSSSSPTLPSNQ
DFHFFNNFSDFKLPIDQIAKTSDSLLESIGASAKIWGANKAINFPSNLDSIADDEAYDWL
VDINDELLERFDVSIDEFHKIRKKEEETGRFIGSDPDNNGFQLVYGKKKKKINGGLLSDS
VGVSVSGKEGGFSGSSGVKVKKEALATGTTGKAKVPFHIPMIRKPQEEYNILVNNSNQPF
EHVWLQRSEDGQRFVHPLENLSVMDFVEKDVADIQPIKPPSIESTSFKLVEEVKDLKDLA
SKLSGVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPT
KKKVMHGADRDIVWLQRDFGIYVCNLFDTGQASRVLKLERNSLEHLLQHYCGVTANKEYQ
NADWRLRPLPDEMLRYAREDTHYLLYIYDLMRIKLLSMPQEGEHLDAPLVEVYKRSSDVC
TQLFEKELLTENSYLHIHGLQVAGFNAEQLAVVAGLCEWRDIIARAEDESTGYVLPNKTL
LEIAKQMPVAAHKLRQLLKSRHPYVERNLGAVVSIIRHAMQNAVAFEAAAQQLKMGHMLN
ASEQHIAAKEGAEVLIPVTPTDLKTANDRTRIIDDAVVGPDGISAQSASLQHKHKSIRIG
SSITELDRDKKQEGFSFEPHVNGSSLYARENLVISGKSGDANAHTVIPPSAKMATGATIQ
VLKKPSRGFGALLGNASTKKKFDMEKKEKEDSKLAQIRSSVNLSFHSFSGTAEQSKPPVN
EPTKFPEAPQPKEPPAVVATESSTLEDIIMLEDNSKKDEQVDGSGSPEVNDTPGKESCMA
PSSETEKEDETMSLSDLSTSFQQCFESMNQNRKAVTVKKSNEASGVLQIKPFDYEAARKE
IKFGEDAETESGSHAKSGGKKKSSVMGRLQIEDGSKQFPQARRRQAFPASGNRSATFR
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgctttttctacactacaaccctaacacaacgatgaacgactacgacgatcagataaca
atggaagcccaatctcaaccttcagagaattctcaaattcttcaaacgttagctctaggt
cctctctcttcttctctttcttcactctcttcctcttctccaaccctcccttccaatcaa
gactttcatttcttcaacaacttctccgatttcaagcttcccatcgatcaaatcgccaaa
acatccgattctttgcttgaatccattggcgcttcggctaaaatctggggcgccaacaag
gccatcaatttccctagcaaccttgacagcatagccgatgatgaagcttatgattggctc
gttgatatcaacgacgaacttttggaacgatttgacgtttccatcgacgaatttcataag
attcgaaagaaagaagaggaaacgggccggtttattgggtcggatcctgacaataatggg
tttcagttggtttacgggaagaaaaagaagaaaattaacggtggtttattgagtgactcg
gttggtgtgtcagtgagtgggaaggaaggtgggttttcgggttcttctggagtgaaggtg
aagaaagaggcattggctacggggacgactgggaaagctaaggtgccatttcatatacca
atgatacggaagcctcaggaagagtataatatacttgtgaataattcgaatcagcctttt
gaacatgtttggttgcagaggagtgaggatgggcagcgttttgttcatccattggagaac
ctctctgttatggattttgtggaaaaagatgttgcagatattcagcccatcaaaccccca
tcaattgagtctacctcatttaagctggttgaggaagtaaaagatttgaaggatttagca
tctaagttaagcggtgtggaagagtttgcggttgatttggagcataaccaatatcgatct
tttcaaggactaacttgcttgatgcaaatttctactagaactgaggattttattgtagat
actttgaagcttcgaattcatgttggcccatatcttagggaagttttcaaggatcccacc
aagaaaaaggttatgcatggagcagacagggatattgtgtggcttcaacgagactttggc
atatatgtgtgcaatctctttgacactggacaggcctcaagggtcttgaaattggaaaga
aatagtttagagcatcttctgcaacattattgtggagttacagccaacaaagagtaccag
aatgcagattggagattgcgtcctcttcctgatgaaatgctcagatatgctagagaagac
acacactacttactgtacatttatgatttaatgagaatcaaattgctgtcaatgccccag
gaaggtgaacatttggacgctcctttggtagaggtctacaagcgaagttctgatgtatgt
acacaactgtttgagaaagagctcctgacagagaattcatatctccatatacatgggttg
caggtggctggtttcaatgctgagcagctagcagttgttgctgggctttgtgaatggcga
gacattattgctcgcgcagaggatgaaagtactggttatgtattgccaaacaagacgctt
cttgaaatcgccaagcagatgcctgtagctgctcacaagttacgtcaattgttgaaatct
agacacccatatgtggagcgaaaccttggtgcagttgttagcatcatcaggcatgctatg
cagaatgctgttgcatttgaagctgctgctcaacaacttaaaatgggacatatgctaaat
gcatcagaacaacatatagcagctaaagagggagctgaggtcttaattcctgtgactcct
acagacttgaaaactgcaaatgatagaacaagaatcatagatgatgctgtagtaggacct
gatgggataagtgcacaatctgcttctctgcaacataaacacaaatcaatcaggattgga
agcagtattactgaacttgacagagacaaaaaacaagaaggattctcttttgagccacat
gtgaatggtagctcattgtatgcgagagaaaatcttgtcatctcgggaaagagtggagat
gcaaatgcccatacagttattccaccttcagcaaagatggcaactggagcaactattcag
gttctaaagaaaccaagccgtggctttggagcacttctggggaatgcttccacgaagaag
aaatttgatatggagaaaaaggagaaggaagatagtaagttggcgcagatcagatcttca
gtaaatctttcatttcactcattctcgggcacagcagagcagtcaaaacctcctgttaac
gagccaactaaatttccagaagctccacagcccaaagaacctcctgctgtggtagctact
gagtcgtcgacattagaagatattatcatgttagaagataattcaaaaaaggatgaacaa
gttgatggtagtggtagtccggaagtaaatgatacacctgggaaggagagttgtatggca
ccttcctctgaaacggagaaagaagatgagaccatgtctttatccgatttatctaccagc
ttccaacagtgcttcgagtccatgaatcaaaacagaaaagcagttacagtgaagaaatca
aacgaagctagtggtgttttgcaaataaagccatttgattatgaagcagctaggaaagag
attaagtttggagaagatgcagagacagaatcaggaagccatgcaaagtctggtggtaag
aagaaaagttcagtaatggggcgactgcaaatagaagatgggtctaaacaatttcctcaa
gctaggcgacgacaagcttttcctgcatctgggaacagaagtgcaactttccgatga
DBGET
integrated database retrieval system
