Gossypium hirsutum (upland cotton): 107913860
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Entry
107913860 CDS
T04793
Name
(RefSeq) transcription initiation factor TFIID subunit 12b isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107913860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107913860
03036 Chromosome and associated proteins [BR:
ghi03036
]
107913860
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107913860
Coactivators
SAGA/TFTC/STAGA complex
107913860
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107913860
STAGA complex
107913860
TFTC complex
107913860
SAGA complex
107913860
SLIK complex
107913860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Histone
Motif
Other DBs
NCBI-GeneID:
107913860
NCBI-ProteinID:
XP_016698011
UniProt:
A0A1U8K677
LinkDB
All DBs
Position
D10:5207356..5215105
Genome browser
AA seq
634 aa
AA seq
DB search
MAETTAAVTTTTSSTQSPNPMMMDPSQPSSSAMPTPAPPPPTAVTTTSRTLAPAPSTNSS
ILPQNNNNPSPSPSIDPSSLQNQQQQQQQISQILSPPLPQQQHQQQQQQQQTQPNVAALS
NFQIQQSLQRSPSISRLNQLQQHQQQSQQQQQQQHQSQYNNVLRQGLYGQMNFGASTSVQ
ANQQQNQQNQQMGNPNLSRSALIGQGGHLLGGAAAQLSLQSALLASPRQKAGMVQGSQFH
PGNPTGQSLPGMQAMGMMNLGSQLRANGALYAQQRINQGQMRQQLSQQTQLTSPQVQSLP
RTSQAFINSQLSGLAQNGQAGMMQNSLLQQQWLKQMPSMSGPGSPSLRLQRQSQVLLQQQ
LASSSQLHQNPMSLNPQQLSQLVQQQSQMGHPQMQQPQQHQQQQQQLLQQQQLQQHAQQQ
LQPQQPPLHQPQQQQSPRMSGPAGQKTLSLTGSQPDATASGTTTPGGSSSQGTEATNQLL
GKRKIQDLVSQVDSQGKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESRDLLL
HLERNWKLPVPGFSSEERNQTSPLSSDLHKKRLDMVRALMESSQPETNANNPKEMIRQGL
GNPVSANHLSRPSPGSEQLVSQAAGSQMLQQITR
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaacgactgctgctgttactactactacatcttctacgcaatctccgaatccc
atgatgatggacccttcacaaccgtcatcgtcggcgatgcctacacctgcaccgccgcct
cccacggcggtgactacgacttcaagaacgttagcgcctgcaccttcaacgaattcctca
attcttcctcaaaacaacaacaatccttctccttctccttccattgacccttcttcactg
caaaatcaacagcagcagcagcagcaaatctcgcaaattttgtctccacctcttccccaa
caacaacatcaacagcagcagcagcaacagcaaacacagccaaatgttgcagctttatca
aatttccaaatccagcaatcccttcaaagatctccatctatttcacgccttaaccaactc
caacaacaccaacaacagagccagcagcagcaacaacaacaacatcagtctcaatacaat
aatgttttaaggcaagggttatatgggcaaatgaattttggtgcgtcaacttcagttcaa
gctaaccagcaacagaaccagcagaatcagcagatgggcaatcccaatttatcaaggtca
gctttgattgggcaaggtggtcatttgctcggtggtgcagcagctcagcttagtttgcag
tctgcgcttttagcttcgccgaggcaaaaagctggaatggtgcaaggatctcagtttcat
ccaggaaatccaactgggcaatctttgccagggatgcaggcaatggggatgatgaatttg
ggctcacaactaagggctaatggagctctttatgcacaacagcggataaatcagggacag
atgaggcagcagttatcacaacaaactcaactgacatctcctcaggttcaaagcttacca
agaacatctcaagccttcatcaactctcagttatcagggctggctcagaatggacaggca
ggtatgatgcagaactctctcttgcagcaacagtggttgaagcaaatgccgtccatgtct
ggcccaggctcaccctcactccgccttcagaggcaatcacaggtcctcttgcaacagcaa
ctggcatcttcttctcagttgcaccagaatcctatgtccttgaaccctcaacaattgtct
cagctcgtacaacagcagtcacaaatggggcatcctcaaatgcagcagccacagcaacac
cagcaacagcaacagcaactactgcaacaacagcagctacagcaacatgctcaacaacaa
ttacaaccacaacaaccaccattgcatcaaccccaacagcagcagtctcctaggatgtct
ggaccagcaggtcagaaaactctcagtttgacaggatcacagcctgatgcaactgcatct
ggtacaaccacaccggggggaagttcgagccaaggaactgaggcgaccaatcaacttctt
ggaaagagaaagatacaggatctggtttcacaggttgattcgcaaggtaagcttgaacca
gaagttgaagatctacttttggagattgctgatgacttcatagattctgtgactacattt
gcatgcagtttggctaagcataggaaatcgtcaacattagagtccagggatctcttgcta
catttagagagaaactggaaattgcctgttcctggattttcaagtgaagagcggaatcaa
acaagtccattatcaagtgacctccacaagaagcgtcttgatatggtacgagcgcttatg
gaatcatcacagcctgaaacaaatgcaaataatcctaaagaaatgatacggcaagggctt
ggtaacccagtcagtgcaaaccatttatcgagaccttcaccaggttctgagcagttggtt
tcacaagcagctggttcgcaaatgctgcagcaaataactcggtaa
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integrated database retrieval system
