Gossypium hirsutum (upland cotton): 107914071
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Entry
107914071 CDS
T04793
Name
(RefSeq) cleavage stimulating factor 64 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107914071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107914071
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107914071
U7-dependent histone pre-mRNA processing factors
107914071
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
DUF8400
Motif
Other DBs
NCBI-GeneID:
107914071
NCBI-ProteinID:
XP_016698293
UniProt:
A0A1U8KBF4
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Position
D05:23762212..23768835
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AA seq
518 aa
AA seq
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MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLATNFDPQKQLGGQAVHGE
SFHLQPIGLHSAITAAALMAEALGGVQQNQNALPSQPVPTSDPLTLHLARMSRNQLNEIM
SELKKMATQNKELARELLLSKPQLLKAIFQAQIMLGMVTPQVLQMPNIRQPLGQPAQIPL
QDGQHSLQPTAQTLSPMVQAGLIPKVQSQIASVPLNSLARNQVSATLQSTLQPRTQLPQH
SSNYVLPPAAAHSGVPKIPSLNTSVRPQIQVANSSSLNQQLQPSLLHSGQLATANLSHSS
RMVSPNVVMQSAPLPHPSLSDTSFQPGPSITPGIAEKSNIVQNHSEAISQPPKMVKLDGG
KSGSSSVGLNVTNVSGSKTLQTFGVDSAPVNQVPRAQEVQYAEKQISQPQLAPDVESVLL
QQVLNLTPEQLSSLPPEQRQQVIQLQQALRQEHMQQPS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttctcagcatcgctgcgttttcgttgggaatataccatatgatgctactgag
gaacagcttatagaaatctgcagggaggttggcccagttgtttctttcagattggttatt
gatagagaaactggtaaaccaaaaggttatgggttctgtgaatacaaggatgaggagaca
gctctaagtgcacgaaggaatcttcaaggttatgagatcaatggccggcagttgcgagtt
gattttgctgaaaatgacaaaggctctgatcgaaaccgagaacagggccgtggtggacct
ggactggcaacaaactttgaccctcaaaaacaactaggaggccaagcagtccacggcgaa
tcttttcacctgcagcctattggtctccattcagctataactgctgctgctctcatggct
gaagctcttggtggtgtgcagcaaaatcaaaatgctttgccgagtcagccagtaccaacc
agtgacccactaacactccatcttgccagaatgtcaaggaaccagttgaatgaaattatg
tctgagctgaagaaaatggctacacaaaataaggaactagctcgtgagctattgctttca
aaacctcagttgctgaaagctatttttcaggctcaaattatgcttggaatggttacccct
caagtgttgcagatgccaaacataagacagcctcttggtcaacctgcacagattccatta
caggatggccagcatagtctgcagccaacagcacaaactctttctccgatggttcaggct
ggcttgattcctaaagtacaaagtcaaatagcttctgtgcctcttaattctttagctcgc
aaccaagtttccgctaccctacaatcaactttgcagcctcggacacagcttccacaacat
tccagcaattatgttctaccaccagctgctgcacattctggagttcccaaaattccttct
ttaaacacctctgttagaccacaaattcaggtagcaaattcttcatccttgaaccagcaa
ttgcagccgtcattgctgcactcaggacagcttgcaactgctaatttaagtcacagcagt
cggatggtctcgccaaatgttgtcatgcaatcagctcctctgcctcatccttccttatca
gataccagcttccagcctggtccctcaataacacctggcatcgcggagaaatcaaacatt
gttcaaaatcattcagaagcaataagtcagcctccaaaaatggtgaaattagatggggga
aagagcggttcttcctcagttgggttgaatgtgaccaatgtaagtggatctaaaacattg
caaacatttggtgttgattcagcacctgttaatcaagtacctagagcacaagaggtgcaa
tatgctgaaaagcagatttctcagccacagctcgcacctgatgttgagtccgtcttactg
cagcaggtgttaaacctaacaccagaacagctgagttcattgccacctgaacaacgtcaa
caggtcattcaactccaacaggcacttcggcaagagcatatgcagcagccatcatag
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