Gossypium hirsutum (upland cotton): 107914131
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Entry
107914131 CDS
T04793
Name
(RefSeq) F-box protein SKP2A
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107914131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107914131
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107914131
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF7885
LRR_6
LRR_4
LRR_At5g56370
LRR_Zer-1
F-box-like
LRR_At1g61320_AtMIF1
RsmF_methylt_CI
ATRX_C
Glyco_hydro_106
Motif
Other DBs
NCBI-GeneID:
107914131
NCBI-ProteinID:
XP_016698400
UniProt:
A0A1U8K7C2
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Position
D05:22722460..22727065
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AA seq
352 aa
AA seq
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MVAAGNSGVGVRMEGAVITEWKDIPMELLLRIVPLVDDRTAIVASGVCCGWRDAICFGLT
QLSLSWCRKNMNNLVLSLAPKFTRLQTLILRQEYPQLEDNAVEAIANFCHDIQELDLSKS
FKLSDHSLYALARGCPNITKLNISGCTSFSDGALEYLTNFCQKLKILNLCGCVKAATDRA
LQAIGRNCKMLQSLNLGWCDNVGDIGVMSLAYGCPDLKCLDLCGCVRITDDSVIALADKC
LHLRSLDLYYCRNITDRAMYSLAHSRVNNKPSLWQSMKGRYDEEGLRSLNISQCTALTPS
AVQTLCDTFPALHTCSGRHTLVMSGCLSLTSVHCACAVQAHRTLNTIPHTAH
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggttgctgctggaaatagtggcgtgggagttaggatggagggagcggtgatcactgag
tggaaagatattcctatggagctgctgttgagaattgtgcctcttgtcgatgatcggact
gctattgttgcttccggtgtttgttgtgggtggagggatgctatttgcttcggcctcaca
caactcagtctctcatggtgcagaaagaatatgaacaacttggttctctctcttgctcct
aaattcaccagattgcaaactctaatactgcgtcaagagtatccgcagctcgaggacaat
gctgttgaggctattgcaaacttttgtcatgatatacaggagctggacctaagcaaaagt
ttcaagcttagtgatcactctttgtatgcattggcccgtggttgtcctaacattacgaag
cttaatatcagtggctgcacatctttcagtgatggagctcttgaatatttgactaacttt
tgtcaaaaactaaaaatattaaatctctgtggatgtgttaaagctgcaactgaccgtgca
ttgcaggctattggacgaaactgcaaaatgttgcaatctttaaatctgggatggtgtgat
aatgttggtgatataggagtgatgagtctagcttatggatgccctgatctcaaatgcctg
gacttgtgcggctgtgttcgcataacagatgatagtgtgattgcgttggcagataagtgc
ctccatttaaggtcacttgatctgtactactgtcgcaatatcacagacagggcgatgtac
tcgctggctcacagccgagtgaataacaagccttcgttgtggcagtccatgaagggtaga
tatgatgaggaaggtcttagaagtctgaatataagccagtgtactgcactgactccttca
gccgtacagacattatgcgatacgtttccagcccttcacacttgctccggaaggcatacc
cttgtcatgagtggctgcttgagcttaacatcagtgcattgtgcttgtgcggtccaagct
catcggacactcaacactattccccatactgctcattga
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