Gossypium hirsutum (upland cotton): 107914196
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Entry
107914196 CDS
T04793
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3 isoform X1
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107914196
03036 Chromosome and associated proteins [BR:
ghi03036
]
107914196
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107914196
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
107914196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
RRM_1
HAT_Syf1_CNRKL1_C
TPR_14
Lsm_interact
HAT_Syf1_M
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
107914196
NCBI-ProteinID:
XP_016698498
UniProt:
A0A1U8KCW3
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All DBs
Position
D10:10398633..10413878
Genome browser
AA seq
856 aa
AA seq
DB search
MKLFLAKEEGKKSEAKETRMDFEKSSVSIKDDTEMADDDTAQNPESSRKLSSDSDSSDSE
DEAEQTQQLRALESDLSTNPSNYDAHVLYIKLLRRRGEIEKLREARENMNVLFPLTPAMW
VEWAKDEASLLNDSDSESVEKLYERGISEYLSIPLWREYLNYVLQHDPKVCDSSVDGVSK
ARNLFERAVTAAALHVAQGSQIWDAYTQFEQSILLTIDQSDIQAKEKQVQRIRSIFHRQL
SIPFANMKSTLLSYKAWEVEQGNSLDSESDNVVGISSHVASSYRKAEEMYNARAHLEEHI
TRQGISESERYQHFMSYLDFEKSFGDPARVQSLYERAITDFPVSSDLWLDYTRYLDKTLE
AGKVVKDVYSRATRKCPWVGELWVRYLLCLEHGLASEKEISAAFEKSVQCTFSTLEEYLD
LFLTRVDGLRRRLSSARGDDVLNYSLIRESFQQATDYLSPHLKNTDGLLRLHAYWACLEL
KLNNNLTAARGVWGSLLKTCGSMLEAWQGYIAMEIALGHINEARAIYKRCYSKRFSGTGS
EDICHAWLRFEREFGTLDDLDHAVQKVMPRLEELQLFRLEQESKSLTEVTDKRERPLKKT
ASEKRKSGSITIDEQSPAKRQKSTQNQKKLHEKENTRGLKLAEANGGEEKKGKVEEQVNE
QLVKDTYSSKTRLYTDQCTAFASNLNIRAIDEDLKQFFSDVGGVTAIRILHDKFTGKSRG
LAYVDFKDEEHLAAALAKNKQMLLGKKLSITRSNPKRGKRESGALTTSEHDSNQSGIEGS
SASKESVEISKGSSVAPQVPHSRKHFESIQLKGKNTFAVPRNVKPLGWTTNKPGTKKEED
EKPKSNDEFRKMFMKS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatttttagcgaaagaagaaggaaaaaaaagcgaagcaaaagaaactagaatg
gattttgagaaatcctcagtttccataaaagatgacactgaaatggcggacgatgacact
gctcaaaaccctgagagcagtcggaaactcagtagcgactcggactcaagcgattcagaa
gacgaagcggagcagacacagcagcttcgagctttagagtctgacctctctaccaatcct
tccaactacgacgcccatgtcttgtacataaagcttttgaggagaaggggtgaaatagag
aagctacgagaagctagggaaaatatgaatgtattgtttccattgactccagcaatgtgg
gtggaatgggccaaagatgaagcttctcttctgaatgattccgattccgagtcagtcgag
aagctttacgagagaggcatctctgagtatctgtctatccccctttggcgtgagtaccta
aattatgtgctacaacatgatccaaaagtatgtgatagttcagttgacggggtttcaaag
gctagaaatctttttgagcgtgctgttactgctgctgctttacatgttgctcaaggttct
caaatatgggatgcatacactcagtttgagcaatctattttactaaccattgaccaatca
gacattcaggcaaaggagaaacaggtccagcgcattcgaagtatattccatcgtcaattg
tctattccctttgctaacatgaagtctactctcctatcctacaaggcatgggaggtggaa
caaggaaattctcttgattcagaatccgacaatgtggttgggatttcctcccatgttgct
tcatcttaccggaaggcggaggagatgtacaatgcccgtgctcatcttgaagaacatatt
acaagacagggtatatctgagtctgaaagatatcaacattttatgagctacttagatttt
gaaaaatcctttggggatccggcacgagtccaaagtctgtatgaacgtgccataactgat
tttcctgtatcaagtgatctctggcttgattatactcgctatcttgataaaaccttagag
gcaggcaaagttgtgaaggatgtttattccagggcgacaagaaaatgcccctgggttgga
gaactttgggttcggtatttgctatgtttggagcatggtcttgcttctgagaaagagata
tctgctgcctttgagaagtccgtgcaatgcacattttcgacccttgaggagtaccttgat
ttgttcctcactcgagtggatggcctaaggcgtagactttcatcagccagaggagatgat
gttttgaactattcattgattagggaatcttttcagcaagcaacagattacttatcacca
cacttgaagaacactgatggtttattgcgtttgcatgcttattgggcctgcttagagctt
aaattgaataacaatttaactgctgctcgtggtgtttgggggagcttgcttaaaacctgt
ggttcaatgttggaagcatggcaaggttatatagcaatggaaattgctttaggccatata
aatgaagccagggccatatacaagagatgctacagcaaaagatttagtggaacaggttcg
gaggatatctgccatgcttggttgcgctttgagagggagtttggaacattggatgatctt
gaccatgctgtgcaaaaggttatgcctcgtcttgaggagctgcaattgtttaggttagag
caagaatctaaatctttaactgaagtgacagataaaagggagcggccccttaagaaaact
gctagtgaaaagaggaaatcgggttcaatcacaattgatgaacagtctccagctaagcgg
cagaaaagtactcaaaatcagaagaaattgcatgagaaagagaacacacgagggctgaag
ttagctgaagcaaatggcggggaagagaaaaagggcaaggttgaggaacaagtaaacgag
cagctagtgaaagacacttactctagtaaaaccagattatatacagatcagtgcactgca
tttgcatcaaatcttaacattagggcaatagatgaagatctaaagcaattctttagtgat
gttggtggagtcactgcgattcgaattctgcatgacaagttcactggaaaatcgagggga
ttggcatatgtggattttaaggatgaagaacaccttgctgcagctctagcaaagaataag
caaatgttgcttggcaagaagttgagcattacacgctcaaatccaaagcgaggcaagaga
gaatctggtgctctcactacatctgaacatgatagcaatcagagtggaattgaagggagt
tctgcatctaaagaatctgttgaaatctcaaagggttcaagcgtagctccccaggtacca
cattctcgtaagcattttgagagcattcaactgaaggggaaaaatacgtttgcggtgcct
agaaatgttaaaccacttgggtggactactaacaagccaggaaccaagaaagaggaagat
gagaagccaaaatcgaatgatgaattcagaaaaatgtttatgaaaagctga
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