Gossypium hirsutum (upland cotton): 107914203
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Entry
107914203 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107914203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107914203
03036 Chromosome and associated proteins [BR:
ghi03036
]
107914203
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107914203
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107914203
PBAF complex
107914203
GBAF(ncBAF) complex
107914203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
DPOA2_OB
IAT_beta
Motif
Other DBs
NCBI-GeneID:
107914203
NCBI-ProteinID:
XP_016698518
UniProt:
A0A1U8KC24
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All DBs
Position
D10:complement(10645021..10648254)
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AA seq
542 aa
AA seq
DB search
MSMNNNNPPKSLGASSSPFSNAGMPGNPVFSQAQAQAQAQLSAGFQAQFQLSQAQALALA
QSKAQALAQAQGQVAHAQFQAQLQAQSLSLNQAQNAGIGNIGSSSPSFSTPGSASVKRIF
QRPPMRPPGVPMTNTMSPLRMMELTPAARRKKQKLPDKQLQERVAAILPESALYTQLLDL
ETRVDAAVARKKVDIQEALKNPPSVQKTLRIYVFNTFANQLQTIPKKPNAEPPMWTLKII
GRILEXGIDPDQPGFVNKTNPFYPKFSSFFKRVTISLDQRLYPDNHIIIWEHARSPTPQE
GFEVKRKGEKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRILAAIWHYVKARKL
QNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNA
CYDVVVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSP
VEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPG
SI
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaacaacaataatccccccaagagccttggagcgtcttcgtctcccttcagt
aatgcggggatgcctggaaaccctgtattctcgcaagcacaagcacaagcacaagcacaa
cttagtgctggttttcaagctcagtttcagctatcccaagctcaggcccttgcattggct
cagtcaaaagctcaggcccttgctcaagctcaagggcaggtagctcatgcccagttccaa
gcacaacttcaagctcaaagtttgtcccttaaccaagctcaaaatgctggcattggtaat
ataggttcgtcttcgccatccttttctactcctggcagtgcaagtgtgaagaggatcttt
caaaggccccctatgcgtcctcctggtgttccgatgacaaacacaatgtcccctttgaga
atgatggaacttacacctgccgcgcgaagaaagaagcagaagcttcctgacaaacagtta
caagaaagagtggctgcaattcttcccgaatctgctttgtatacccagcttcttgacctt
gagacacgtgttgatgccgcggttgctcggaaaaaagttgacatccaagaagcacttaaa
aaccctcctagtgttcagaaaactcttcgaatatatgttttcaatacatttgctaatcag
cttcagacaattccaaagaagcctaacgcagagccccctatgtggacccttaaaattatt
gggaggatcttggaangagggatagatccagatcagcctgggtttgttaataaaacaaac
cccttttacccgaaattttcgtctttcttcaaaagagtgactatctctttggaccagaga
ttatatccagataatcatatcattatatgggaacatgctcgatctcccacaccacaagaa
ggttttgaggtgaagagaaaaggggaaaaggaattcactgtgaatataaggttggaaatg
aattatgtacctgaaaagtttaagctttcttcagctttaatggaagtccttggcattgag
gttgatacgcgccccagaattctagctgcaatttggcattatgtgaaggctagaaaactt
cagaacccatacgatccgtccttttttaattgtgatgcacagcttcagaaagtttttggg
gaagacagagtgaaatttaccatggtttcacagaagatatcgcagcatttgtctccacca
ccacccatacatttggagcataaaatcaagctttccgggaatagtcctgctggaaatgca
tgctatgatgtggtagttgatgtgccctttcctatacagagggaattgtctgctctgttg
gcaaatggagagaagagcaaagagattgatgcttgtgatgaagcaatctgtgctaccata
aggaaaattcatgaccactgtagaagacgtgcattcttcctaggattcagtcaatctcca
gtagaatttataaatgctttagttcagtctcagagccaggatctgaaaatggtagctgga
gaacctagtcgaagtgctgaaaaagagcggcgatcagatttctttaaccaatcttgggtt
gaggatgctgtgatccgctatctgaatcgcaagccacctgctggaagtgatgctccagga
agcatatga
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