Gossypium hirsutum (upland cotton): 107914407
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Entry
107914407 CDS
T04793
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107914407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107914407
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107914407
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
107914407
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
ATPgrasp_YheCD
Motif
Other DBs
NCBI-GeneID:
107914407
NCBI-ProteinID:
XP_016698805
UniProt:
A0A1U8K8J2
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Position
D10:15643825..15647557
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AA seq
321 aa
AA seq
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MRGLQLPLSQTQRIRLQRALEKLQSLSCKANSDASVTVADTIPVNYEDAFLKGHGTTDLN
GDLVATVCGVVERINKLVYVRALRARYKPEVGDIVVGRVVEVSQKRWRLEINFSLDAILM
LSSMNMPDGIQRRRTALDELNMRCIFEENDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG
QLLIVDPYLVKKSKQHFHHLEQFGIDLILGHNGFIWVGEHVEARDSMVVDQANSSEQSRV
PEEKNQTHTPLEMRQNICRIANAVRVLSTLGFSIDADLILETVELSSTVKIDIHDMLGSE
FHVLVAEREAERRSLMGKRKR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagaggattacagctgcccttgagccaaacgcaaagaatacgacttcaaagagcattg
gaaaagcttcagtctctttcttgtaaggccaattccgacgcttccgttaccgtcgccgat
accattcccgtcaactacgaagacgcttttctcaaagggcatgggacaacggacctaaat
ggcgatttggtggcaactgtgtgtggcgtggtggagcgcatcaacaaactggtctatgta
cgcgctttacgcgctaggtacaagcctgaggttggggatatcgtagtgggacgtgtagtt
gaggtttctcaaaagcgatggagattggagataaatttcagcctagacgccattttaatg
ctttcctccatgaacatgcctgatggtattcagaggcggcgtactgctttggatgaactc
aacatgcgttgtatttttgaagagaacgatgttgtctgtgctgaggttcgtaatttccag
catgatggcagcttgcaactccaagcaagaagtcaaaagtatgggaagcttgagaagggt
caattgctcatagttgatccttacctagtgaagaaaagcaaacagcatttccatcacctt
gaacagtttggaattgacctgatactcggacataatggattcatatgggttggtgaacat
gttgaagccagagacagtatggtagtggatcaagctaatagttctgaacaatccagggtt
cctgaagaaaaaaaccaaactcatacccctctagagatgaggcagaacatatgcagaatt
gcgaatgctgttcgtgtgctgtcaactttaggtttcagtatcgatgcagatttgatcctg
gagacagttgagttgagcagcacagtgaaaattgacatacatgacatgctaggctcagag
tttcatgttttggttgcggaaagggaagctgagcggagaagcttgatgggaaagcggaaa
agatga
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