Gossypium hirsutum (upland cotton): 107914408
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Entry
107914408 CDS
T04793
Name
(RefSeq) crossover junction endonuclease EME1B isoform X1
KO
K10882
crossover junction endonuclease EME1 [EC:3.1.22.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107914408
03460 Fanconi anemia pathway
107914408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107914408
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
107914408
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
ERCC4
EME1-MUS81_C
Motif
Other DBs
NCBI-GeneID:
107914408
NCBI-ProteinID:
XP_016698807
UniProt:
A0A1U8K8H4
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Position
D10:complement(15624525..15633071)
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AA seq
569 aa
AA seq
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MSDPIILSDGDDPKTPRPSIYKKPRTVPDSHLPPVLILDDDPTPQKPSLGPPFTCGSTPS
FVAETPMSEPSVVRCSNAGPSIEASDPQIGDAKLSGISRLICLESDNDSETGSKRDNDQE
NGSKCSYIDESEELEWHSRVFDYEAHLGSSNLIQMCEDSSSQPLYEEDDGDPQLLEVNDD
PDKENFALEQIGNTIKQNREMKADSDKKSSTHGATVKRKMMKEERTRMLEEKKLKKEQEK
LQKAALKAEAVEFKKLQKERQKWEKGKFALKSIVAEIDTKVVELGSIGGHLLSRLADKGL
TYRITSNPIEKSIVWTMAVPEHISQLSPEGLEIQYVLIVSEAAEFCDLVTSDTLLDHISR
VRSKYPSYTVCYLTNRLLAYINKRENEQYKNPAIDSGWRRPLVEEVLAKLTTYYARVHSR
QCADESELAEHVVGLTCSLASCQFRKKLTRLCVSANGSLIPKDSIDKNLIKGNLWLKALL
AIPKVQPRFALAIGRKYPTMKSLLRVYMDPTKSVHDKEFLLKDLVVEGLLGNDRRLGEIC
SKRVYRVLMAQSGSVKTDDIEDGADFFTH
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatccaatcatcctatccgatggagacgacccaaagaccccccgcccttccatc
tacaagaagcccagaaccgtaccggacagtcatttacctccggttttgattctcgacgat
gaccctaccccgcaaaaaccgtcactgggcccccccttcacttgcggctccactccttcc
tttgtggccgagactccgatgtcagagccttcggtcgtcaggtgctccaatgctggccct
tcaattgaggcttcggatcctcaaattggagatgccaagctctctggaataagcagattg
atatgtttggaatctgataatgattctgaaactggttctaaaagggacaatgatcaggag
aatggatcaaagtgttcctacattgatgagtccgaagagttagaatggcattctagagtt
tttgattatgaagctcatctagggagttctaatctaatccaaatgtgtgaggacagttct
tctcagccattgtatgaagaggatgatggtgatccacaacttcttgaggtaaatgatgat
ccagacaaagaaaattttgccttagagcagattgggaacacaataaagcagaatcgagaa
atgaaagctgattctgataagaaaagtagcacacatggagcaacggtaaaaagaaagatg
atgaaggaggagcggactcgtatgttggaagaaaagaagctaaagaaagagcaagagaaa
ttgcaaaaagctgctttgaaagctgaagctgttgagttcaaaaaattgcagaaagaaagg
cagaaatgggaaaaaggaaagtttgctctaaaatctattgtagctgaaattgatactaag
gtggttgaactagggtcaataggaggacatttactttcaaggttggctgataaaggcctt
acatatcgcataacgtcaaatccaattgaaaaatcaattgtatggactatggcagttccc
gaacatatttcacagctttctcctgaaggactagagattcagtatgtattaattgtatct
gaggctgcagagttttgtgatctagtaacaagtgacacacttttggatcacatttctaga
gttcgaagtaaatatccatcgtatacagtttgctatcttacaaatagactattggcatac
attaataaaagggaaaatgaacaatacaagaaccctgcaattgatagtggttggagacgt
ccgctggttgaggaggtgttggcaaagctgaccacatattatgctagggtacactctagg
caatgtgctgatgaatctgaactggccgaacatgttgttggtttgacatgcagtctagcc
tcgtgccaattcagaaagaagttaacgcgactctgtgtaagtgctaatggatcccttatt
cctaaggattctattgacaagaatttaataaaggggaacttgtggttaaaagctttgctc
gccatcccaaaggtccagccacgatttgctcttgccatagggagaaagtaccctaccatg
aaatctcttttgcgcgtttacatggaccctactaaatcagtgcatgacaaggaatttctg
ctcaaggacttggtggtagaagggttattaggtaatgacagaagattaggtgagatttgt
tcaaagagagtctatagagtactcatggctcagagtggaagcgtcaaaactgatgatatt
gaggatggtgctgatttcttcacacattag
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