KEGG   Gossypium hirsutum (upland cotton): 107914519
Entry
107914519         CDS       T04793                                 
Name
(RefSeq) WD repeat-containing protein PCN
  KO
K14548  U3 small nucleolar RNA-associated protein 4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    107914519
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ghi03009]
    107914519
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    107914519
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR90_POC16_2nd WD40_Prp19 WDR55 ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_RIG_2nd EIF3I Beta-prop_SPT8 Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th PQQ_2 DUF4221
Other DBs
NCBI-GeneID: 107914519
NCBI-ProteinID: XP_016698948
UniProt: A0A1U8KDC1
LinkDB
Position
D10:18739649..18745441
AA seq 833 aa
MLPKAYRTSSIDWKPSPVVALATSPDGSQVAAARDDGSLEIWLVSPGSVGWHHQLTIHGD
STCRVSSLVWCCVGSKGPSPGRLFSSSIDGSVSEWDLFDLKQKILLESIGVSIWQMAVAP
INRLPTHEETRSQNFGNGYLNDKYECDDTDDDENCESEDVSDSEQVYQKLVMEDRCVAIA
CDDGAVRMYTISDLDKLIYQKSLPRVSGRALSVTWSHDSNRIYSGSSDGLIRCWNADLGH
EIFRSVVGLGGLGSGPELCVWSLLSLRCGTVVSADSTGSVQFWNGDNGTLLQTHSTHKGD
VNALAASPRQNRVFSAGSDGQVILYKLSSEMLQSRNDKSSYEMLKKWVFVGSVRAHTHDV
RALTMAVPICSEGSLSDEAKDLQDEKRKKVKRIRTREKKPLNFSYGKWAHFGVPMLVSAG
DDAKLFAYSAMEFTRFSPHDICPAPQRVPIHLVTGSRFNQTSFLFVQASCWLDVLSVNAP
DGGSGPYGGLVTTNIVARVKSKAGRKIICSAMSNSGEFFGYSDHIRPSLFELSRQAGQST
WTISKRQLPQKLPSAHSMIFTSDGSRLLIAGHDRRIYVVDLESLKLLHTFIPSRQEHEKE
GPPDEPPITKMFTSSDDQWLAAINCFGDIYLFNLEILRQHWFISRLDGASVTAGGFPPQR
NNVLIITTSSNQFYIFDVEARQLGEWSMQHSFTLPRRYQEFPGEVIGLSFCPSSSSHPSK
STSLVVYSARAMCSIDFGKAVDEDDESQLVHEALLKLQGSITNKKLKYLLIDGRQTESKH
TSRKNNFEIIGFRDPVLFIGHLSKNSILMVDKPWMEVVKSFDTTPVQRHIYGT
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgctccccaaagcttacagaaccagctcaatcgactggaagccgtctccggttgtcgcc
cttgctaccagccccgacggctcccaggttgcggccgctcgtgatgatggctccctcgag
atttggctcgtctctccaggctctgttggctggcatcatcagctgactattcatggggat
tctacttgtcgagtttcctcgctggtgtggtgttgcgttggttcaaaaggcccgtctcct
ggcaggttgttctcctcgagtattgatggctcagtctcggaatgggatcttttcgacttg
aagcagaagattttgctagagtcaattggagtttcaatctggcagatggctgtggcaccg
attaatagactgccaactcatgaagagactaggtctcagaattttggaaatggttatttg
aatgataaatatgaatgcgatgatactgatgatgatgaaaactgtgaaagtgaagatgtt
tcagactcagaacaagtttatcagaaactagttatggaagatagatgtgtagcaattgct
tgtgatgatggagctgtgcgaatgtacactatttctgatcttgataagttaatctaccaa
aaatcattgcctagggttagtggacgtgctctaagtgtgacctggagtcatgactcaaat
aggatatattcagggagtagcgatgggttaattagatgctggaatgctgatttgggtcat
gaaattttcagaagtgtagtaggtcttggaggtttgggcagtgggcctgagctttgtgta
tggtcattactttctttgaggtgcggaactgttgttagtgcagacagcaccggatctgtt
cagttctggaatggtgataatgggactcttcttcagacacattctacccacaaaggtgat
gtgaatgccttggcagcatctccaaggcagaacagggtattttctgctgggtctgatgga
caggttattctttataagctttccagtgagatgcttcagtctcgtaatgacaaatcttct
tatgaaatgttgaagaaatgggtgtttgttggttctgtaagggctcatacccatgatgtc
agagccttgacaatggcagtgcctatatgttctgaaggttctttatctgatgaggcaaaa
gacttgcaagacgaaaagaggaaaaaagtaaaaagaatccgaactcgggagaagaagccc
ctcaattttagttatggtaaatgggctcattttggagttcccatgcttgtatctgctggt
gatgatgcgaagctttttgcctactctgctatggagttcactaggttctccccacatgat
atttgccctgcacctcagagagttccaatacatcttgtcactggctcaaggttcaaccaa
acttcttttctctttgtccaggcttcttgttggttagatgtactctctgttaatgctcct
gatgggggttctggcccatatggtggtctggtgaccactaatatagtagctcgggttaag
agtaaggcaggtcgaaaaatcatttgcagtgcaatgtctaactcaggggagttttttggt
tattctgatcacatcagacctagtctatttgaactaagtaggcaagctggccaaagtaca
tggaccattagtaaaaggcaacttcctcaaaaacttccatctgcacattctatgattttt
acctctgatggatcacggttgctgatagcagggcatgatagaaggatctatgttgtggat
ttggagagcttgaaacttctgcataccttcattcctagtcgtcaggagcatgagaaggaa
gggccccctgatgagcctcccataacaaaaatgttcacaagttctgatgaccagtggtta
gctgctatcaactgctttggagatatatatttattcaatctggagatactgaggcaacac
tggtttatatcaagattggatggtgcctctgttactgccggtggctttcctcctcagaga
aataacgtgcttattatcacaacatcctcaaaccaattctatatatttgatgtggaagct
agacaattgggagaatggtcgatgcagcattcatttactcttcccagaagataccaagaa
tttcctggggaggttattgggttatctttctgcccttcatcatcctcccatccatcaaaa
tcgacatctcttgttgtttacagtgcaagggcaatgtgttcaattgactttggaaaggca
gtagatgaagatgatgaaagtcagttggtacatgaagcattgttgaagcttcaaggctct
atcaccaataagaaattgaaatatttgttgatagatggtcgtcaaacagagtcaaaacat
actagtagaaaaaataattttgagataattggttttagagacccagttttatttattgga
cacctttctaaaaattccatcttgatggtagacaaaccatggatggaagtggttaaatct
tttgatactacccctgttcagagacatatatatgggacataa

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