Gossypium hirsutum (upland cotton): 107914545
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Entry
107914545 CDS
T04793
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107914545
09124 Replication and repair
03420 Nucleotide excision repair
107914545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107914545
03036 Chromosome and associated proteins [BR:
ghi03036
]
107914545
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107914545
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107914545
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107914545
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107914545
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107914545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
107914545
NCBI-ProteinID:
XP_016698978
UniProt:
A0A1U8KDF1
LinkDB
All DBs
Position
D08:10348594..10355665
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDHIYPEQYSYMIELKRTLDAKGHCLLEMPTGTGKTIALLSLITSYS
LSKPQSPMKLIYCTRTVHEMEKTLAELKILHNYQIKHLGPQARILAMGLSSRKNLCVNPT
VVAAENRDSVDAGCRKLTASWVRALAEENTDVTTCEFFESYEKAASAAVLPPGVYTLQEL
RAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNLSRISQEIDRFKATDTSILRAEYNRLVEGLVLGGNLPI
TDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLSGRLDTENVEKESPVGFVAS
ISSHAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYGRGFSTIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLLEMVSVVPDGIVCFFV
SYSYMDGIINTWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDQHYGRLVIMIGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHLQDANLNLSTDMALHIAREF
LKKMAQPYDKTGSSDKKTLLSQEEMEKLGDGSMHEMSY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaatcgaagacgtcaccgtctacttcccttatgatcacatttacccggaa
cagtactcttacatgatcgaactgaaacgaaccttagatgccaaaggacattgccttctc
gaaatgcctaccggaaccggcaaaaccatcgcgttactatctctcatcaccagctactct
ctctccaaacctcaaagccccatgaagctcatttactgtacgcgcactgtccacgagatg
gaaaaaacactggccgaattaaagattttgcataattaccagattaaacatttaggaccc
caagctaggattcttgctatggggctttcctccaggaagaacttgtgcgtcaacccaacg
gttgtagccgcggagaaccgtgattcggtggatgctgggtgtaggaagttgacagcgagt
tgggttcgagctttggcggaggagaataccgatgtgactacgtgtgagttttttgagagt
tatgagaaggctgcttctgccgccgtgttgccacccggagtttatacccttcaggagttg
agggcctttgggaaggagaaagggtggtgtccgtactttttggctagacatatggtacag
tttgcaaatgtggttgtttatagttatcaatatttgcttgatccaaaggtggctggaatc
atatcaaaggaaatgcagaaagagtccgttgtggtctttgatgaggctcataatattgac
aatgtgtgtattgaagcacttagtgttagtgttaggagacagacacttgaaggagcgaca
aggaatcttagtaggataagtcaagagattgataggttcaaggccactgatacaagcata
cttcgtgctgaatacaaccgacttgtggagggtttggtgctgggaggaaacctacctatc
acagacaactggctttcaaatcctgccttaccggatgatattctaaaggaagctgtacct
ggaaatatccgtcgagctgagcacttcttgcatgttctacgtagattggttcagtatcta
agtggtagactggacactgaaaatgttgagaaagaaagccctgttggttttgttgcctct
atcagtagtcatgctggaattgaccagaaaacattgaaattttgttatgatcgtttgcat
tcactcatgttgaccctagaaataactgacacagatgagttcttacacatccaaacaata
tgtgactttgcaactcttgtaggcacttatggtcgtgggttttcaactattattgaaccc
tttgatgaaaggatgccacatattccagatcctgtcttgcagcttagctgtcatgacgct
tcacttgccataaagcctgtttttgatcgattccaatcagttgttattacatctggcaca
ctcagcccaattgatctgtaccctcgccttcttaactttcatccagttgttagtcgtagc
tttacaatgtccttgactagagattgcatatgtccaatggttctcacacgaggaagcgat
caacttcctgttagtaccaaatttgatatgagaagtgatcctggtgtcgtgaggaattat
gggaagctattgttggagatggtctccgttgtccctgatggaattgtctgttttttcgtc
agttattcatacatggatggaattattaacacttggaatgacagtgggattctgaaggaa
ataatgcaacataagcttgtcttcattgagacgcaagatgttgtagaaacgacattggct
ctggacaattatcgcagggcttgtgactgtggaagaggtgcagtatttttttctgttgcc
agaggaaaggttgctgaaggtatagattttgatcaacattatggcagactagtaatcatg
attggtgttcctttccagtatacgttgagcaagatattgctggcaaggttggagtactta
cgagacacattccagataaaggaaggagattttcttacttttgacgccttgaggcaagct
gctcaatgtgtgggccgagttatccgttcaaaggctgattatgggatgatgatatttgct
gataagagatatagccgacatgacaagcgctcaaaattgccaagttggatactgtctcat
ttacaagatgcaaacctgaatttgagcactgacatggctctgcatatagcaagagagttc
ctaaaaaaaatggctcaaccatatgacaagactggtagcagtgacaagaagactttactc
tcacaagaagagatggagaaattgggcgacggaagcatgcatgaaatgtcgtattaa
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integrated database retrieval system
