Gossypium hirsutum (upland cotton): 107915063
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Entry
107915063 CDS
T04793
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107915063
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107915063
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Methyltransf_9
KxYKxGKxW_sig
Motif
Other DBs
NCBI-GeneID:
107915063
NCBI-ProteinID:
XP_016699665
UniProt:
A0A1U8KAZ5
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Position
D10:31316575..31320528
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AA seq
447 aa
AA seq
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MAASKKWFLASLAVLFLFLVGAMATVQTNNDSSTVEIEKLQNSKNSTMATRSEEVKVLNE
HAVADPEAVAAEVETIIDMNIRNVTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLAD
CGIGFGRNAIGGRDGRFYVVTDPNDDDPVNPKPGTLRHAVIQEQPLWIVFKRDMVIKLKQ
ELLVNSFKTIDGRGVNVHIANGACITIQYVTNVIVHGLHIHDCKPTGNAMVRSSPTHFGW
RTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHS
DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ
GNRYAAPRNPFAKEVTKRVDTAESHWKSWNWRSEGDLLLNGAYFTPSGAGASASYARASS
LGAKSSSMVGSMTSNAGALPCRRGRQC
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttccaagaaatggtttttagcttctttagctgttctgtttttgtttcttgtt
ggagcaatggccacagtacagaccaacaacgattccagcactgtggagatagagaagctg
cagaactcaaaaaactcaacaatggcaactaggtcagaagaggttaaggtcttgaatgaa
catgctgtggctgatccagaggccgtagcagccgaggttgagaccatcattgacatgaat
attcgaaatgtgacggaaaggaggaagttggggttcttctcgtgcggaactggtaatccc
attgatgattgctggcgttgtgaccccaactggcagaagaaccggaagagacttgctgac
tgtggcattggttttggaaggaatgcaatcggggggcgtgatggacgcttctacgttgtc
actgaccctaatgatgatgaccctgttaaccccaaacctgggaccttgcgtcatgctgtg
atccaggaacaaccactttggattgtgttcaagagggacatggttattaagttgaagcag
gagttgctggtcaacagctttaagaccattgatggtcgtggggtgaatgtccatattgct
aatggggcatgtatcacaattcaatacgttaccaatgtcattgttcatggtcttcatatt
catgactgtaagcccactggcaatgccatggttagaagctcacccactcacttcgggtgg
aggacaatggctgatggtgatgcaatctctatctttgggtcaagccacgtttgggttgat
cacaattctctttctaattgtgctgatggtcttgttgatgctgtcatgggctcaactgcc
attaccatctccaacaatcacctcacccaccacaatgaggtgatgttgctgggtcacagt
gactcttacacaagggacaagcagatgcaagtgaccattgcctacaaccatttcggagag
ggacttatccagagaatgccaaggtgtaggcatgggtatttccatgtggtaaacaatgac
tacactcactgggaaatgtatgctattgggggaagtgcaaatcctaccataaacagccag
ggtaacagatacgcagctccaagaaacccgtttgcaaaggaggtgaccaagagagtggac
acagcagaaagccactggaagagctggaactggaggtcggaaggagacttgctgctaaat
ggtgcatatttcactccatctggagccggagcctcagccagctatgccagggcctcaagc
ttgggagccaagtcctcctccatggttggatccatgacttccaatgctggagctctaccc
tgccgaagaggcaggcaatgctag
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