Gossypium hirsutum (upland cotton): 107915200
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Entry
107915200 CDS
T04793
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107915200
03036 Chromosome and associated proteins [BR:
ghi03036
]
107915200
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107915200
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
107915200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
SH2
HHH_3
Motif
Other DBs
NCBI-GeneID:
107915200
NCBI-ProteinID:
XP_016699856
UniProt:
A0A1U8KBI1
LinkDB
All DBs
Position
D10:complement(58039591..58048431)
Genome browser
AA seq
1566 aa
AA seq
DB search
MGRNVFSDEEDELEVDEEGEPMEGDNINDRDPDDEDEEDEDGQDEYENDGFIVDDVEDED
VDEDEEREDSDEERRKKKKKRKKKEAEDLDEDDYELLRENDVNVPKGSKKFKRLKKARRD
FDEEQFGLSDDEFDGGMKGSATAEEKLKRTLFGDDDGQPLEDIAEDEEPIEEEEDGDMGE
EDEMADFIVEEDEEHGASVRRKKMKNKKSRHAPDVSSSALKEAIDIFGDVDELLLLRKQG
LDSSEQKEGRLEDQFEPTVLSEKYMTEKDDQIRMTDVPERMQISEESTGTPPIDELSIIE
ESTWIFNQLINGAVPLFGKERQDHFINKDDIMRFLDLTHVQKLDIPFIAMYRKEQCLTLL
QDPEQHDVDDDQDKSEKAPTMKWHRVLWAIQDLDRKWLLLQKRKSGLQLHYNKRFEEESR
RIYDEPRLNLNQQLFESILKDLRGAESEREVDDVDAKFNLHFPPGEVGVDEGQYKRPKRR
SQYSICNKAGLWEVASKFGYSAEQLGAHLSLEKMDDELEDAKETPEEIASNFTCAMFETP
QAVLKGARHMAAVEISCEPSAKRCVRNIFMDNAVVSTSPTPDGKIAIDSFHQFAGVKWLR
EKPLTRFDDAQWLLIQKAEEEKLLQVTIKLPEKFLNKLIKECNDQYLSNGVSKSAQQWNE
QRKLILHDALFGFLLPSMEKEARSLLASRAKNRLLLEYGKDLWNKVSVGPYQKKESDVSS
DEETAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTAALTLRSQNVHDQQRKKNDQQRV
LKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDESLP
RLYENSRISTDQLPGQSGIVRRAVALGRYLQNPLAMVATLCGPGKEILSWKLNPMENFLT
ADEKYGMIEQVLVDVTNQVGLDANLAASHEWLFAPLQFISGLGPRKAASLQRSLVRVGTI
FTRKDFLSAHGLDKKVFVNAVAFLRVRRSGLAANSSQFIDLLDDTRIHPESYLVAQELAK
DVYDEDLKGDNDDEDALEMAIEHVRDRPGLLKRLRLDNYLKSKDRQNKRETFYDIRRELI
QGFQDWRKPYKEPSQDEEFFMISGETEDTLAEGRIVQATVRRVQGGRAICALESGLTGII
MKEDYADDWRDIIELSDRLHEGDILTCKIKSIQKNRYQVFLVCKDSEMRSNRHQHVQNLD
PYYHEERSSIQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAVEYLCDKEPGESIV
RPSSRGPSYLTLTLKVYDGVYAHKEIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVM
DRYVDPLVSHLKAMLSYRKFRKGTKSEVDKLLTIERQEYPMRIVYCFGISHEHPGTFILT
YIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQNESAPSIRSVAAMVPM
RSPAAGSSAGASTGSGWGGPTNEGSWRGQSFDRGQSSTPGSRTGRNDYRNSSSRDGHPSG
APRPYGGRGRGRGSYNSSRGQNEGQDSSYNGTPKRDSGNKRGEDGLGNFPGAKVQNSPGR
EAFPGG
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaacgttttctctgatgaagaagatgagttggaggtcgacgaggaaggagag
ccgatggaaggggacaatatcaatgaccgcgaccctgatgacgaggatgaagaagacgaa
gatgggcaggatgagtatgagaatgatggattcatagttgatgatgtggaggatgaagat
gtagatgaagatgaagagagggaagatagtgacgaagagaggcggaagaaaaagaaaaaa
agaaagaagaaggaagctgaggaccttgatgaagatgactatgagcttctacgggagaat
gatgttaatgtaccgaagggaagcaagaaatttaagcggttaaaaaaggctcggagagat
tttgatgaggagcaatttggactttctgatgatgagtttgatggaggcatgaagggtagc
gcaactgctgaggaaaagcttaagcgtactctatttggtgatgatgatggacaacctctt
gaagatattgctgaagatgaagagccaatagaagaggaagaggatggagatatgggtgaa
gaagatgaaatggcagactttattgtagaagaagatgaggagcatggagcttctgttaga
cggaagaagatgaagaataagaagtcaaggcatgcaccggatgtttcatcatctgcttta
aaggaagctatagatatctttggtgatgtggatgaactcctgctgttacgcaaacagggc
ttagattctagtgagcagaaagaagggcgacttgaagatcaatttgaaccaactgttctt
tctgaaaagtacatgaccgaaaaggatgaccaaattcggatgactgatgttccagaaaga
atgcagatctcagaggaaagcaccgggactcctccaatagatgaactcagcataattgaa
gagagcacctggatatttaaccaacttataaatggtgcagtaccattatttggtaaagaa
aggcaggatcattttataaacaaggatgacattatgagatttttggatctaactcatgta
cagaagttagatattccctttattgcgatgtatcgcaaggagcagtgtcttactctgctt
caagatcctgagcaacatgatgttgatgatgatcaggataaatctgaaaaagcacctaca
atgaagtggcacagggtgctttgggcaattcaggaccttgaccgaaaatggctgcttctt
caaaagagaaagagtggtcttcagttgcactacaataagcggtttgaagaagaatcacga
cgcatatatgatgaaccaagacttaatttgaaccaacagctttttgaatcaattcttaaa
gatctcaggggcgcagagtcagaaagggaagttgacgatgttgatgccaagtttaacttg
catttcccacctggggaggttggtgttgatgaaggccaatataagaggcccaagaggaga
tcacaatatagtatttgcaataaggctggcctgtgggaggttgccagcaagtttggatac
agtgctgagcaacttggagcacatctatctctggaaaagatggatgatgagttggaagat
gcaaaggagacaccagaggagatagcttcaaattttacatgtgcaatgtttgagactcca
caagctgtccttaaaggagccaggcatatggctgcggttgagataagctgtgagccgtct
gccaagagatgtgttcggaatatctttatggataatgctgtagtatcaaccagccctacc
cctgatggaaaaatagcaattgattctttccatcagtttgctggtgtgaaatggttgcgt
gaaaaacctttgaccagatttgatgatgcacaatggctccttatccagaaggctgaagag
gagaagcttcttcaagtaactattaagctgccagaaaagtttcttaataagttgattaaa
gaatgtaatgaccaatatcttagtaatggtgttagcaaatctgctcaacaatggaatgag
cagagaaagctaatactgcatgatgctctttttggttttcttttaccctcaatggagaaa
gaagcaaggtccttgttggcaagtagagctaagaaccggttacttttggaatatggcaag
gacttgtggaataaggtttctgtggggccttatcaaaagaaagaaagtgatgttagttct
gatgaggaaactgcaccacgggtcatggcctgctgttggggccctgggaagcctgcaacc
acttttgtgatgttggattcatctggggaggtgcttgatgtgctttatactgctgctctt
acattacggtctcaaaatgtacatgatcagcaacgcaagaaaaatgatcagcaacgtgtt
ttgaagttcatgaccgatcatcaaccacacgtcgttgttcttggagctgtgaatttgtct
tgtactcgattgaaggatgatatctatgagattatttttaagatggtggaggaaaatcct
agggatgttgggcatgaaatggatgagctgagcatagtatatggggatgaatctctaccc
cgtctctatgaaaattctaggatttcaacagatcagctccctggccagtcaggcattgtt
aggcgggctgttgcccttgggcgttatcttcaaaatccattagcgatggttgccacattg
tgtggcccagggaaggagatactctcttggaagcttaatccaatggagaacttcctcacg
gcagatgagaagtatggcatgattgaacaggttttggttgatgtcacaaatcaggtgggc
cttgatgctaatttggctgcaagtcatgaatggttgtttgctcctttgcaattcatttct
ggtcttggacctagaaaggcggcatcactgcagagatcattggtcagagttggaacaatt
tttactaggaaagactttttgtcagcccatggacttgataagaaggtgtttgttaatgcg
gtagcctttctgcgcgtcagacggagtgggcttgctgccaacagcagccagttcattgat
ttgttggatgacactagaatacatccagaatcttatcttgttgcccaagagttggccaaa
gatgtttatgatgaggatcttaagggtgacaatgacgatgaggatgcattggagatggca
atagaacatgttagggaccggcctggtttgttgaaaaggcttcgtcttgataactatcta
aaaagcaaggatcggcaaaataagagggagaccttttatgatataaggagggaattaatt
cagggcttccaggattggcgtaaaccgtataaggagccaagtcaggatgaggagttcttt
atgatttcaggtgaaactgaggataccctggcagaaggccgaattgtgcaagctacagtt
agaagagtgcaaggcggaagagctatatgtgcacttgaatctggattgactgggattatt
atgaaagaagactatgcagatgattggagagatataattgagttatctgataggctgcat
gaaggtgacatcttgacctgcaagattaaatcaattcaaaagaatagatatcaagtgttc
ctggtttgcaaagatagtgagatgagaagcaatcgacaccagcatgtccagaacctagat
ccttactaccatgaggagcgaagcagcattcaaagtgagcaagagaaagctcgtaaagag
aaggagctggcgaagaagcattttaagcccaggatgattgtccatccacgcttccaaaat
attactgctgatgaagctgtggagtatttatgcgacaaggagcctggagaaagtatagtc
cgtcccagttctcgtggaccttcttatctgactttaactctcaaagtctatgatggggtt
tacgcccataaagaaatagttgaaggtggtaaagagcacaaggacatcaccagcctgctt
cgcattgggaagacattgaaaattggggaagacactttcgaggatttggatgaggtaatg
gatcgatatgttgatccccttgtgtctcatctgaaggcaatgctgagttatcgtaaattc
aggaagggaactaaatcagaggttgataagcttctaacaatcgagagacaagagtatcct
atgaggattgtctattgttttggcatttctcatgaacatccaggcactttcattcttact
tatatacgaagtacgaatccgcatcatgagtatgttggtttatatcccaagggattcaag
ttcagaaaaaggatgtttgaggatattgatcgtctagttgcatatttccagaggcatatc
gatgatccacagaatgagtcagctccatcaataagatcagttgcagcaatggtaccaatg
cggagccctgctgctggatcctctgctggggcatctaccggtagtggttggggtggtcca
accaatgaaggcagttggagaggccaatctttcgacagggggcaatcttccactccaggg
tcaagaactggccgaaacgattacagaaatagcagtagtcgagatgggcatccaagtggt
gcaccacggccctatggtggacggggacgaggtaggggttcatataacagcagcagagga
caaaatgaggggcaggattcatcatacaatggaactccaaaacgggattcaggtaacaaa
agaggggaagatggtttgggtaatttccccggtgctaaagttcaaaactctccaggtagg
gaagctttccctggtggttag
DBGET
integrated database retrieval system
