Gossypium hirsutum (upland cotton): 107915526
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Entry
107915526 CDS
T04793
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107915526
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
107915526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
AAR2
RYDR_ITPR
XMAP215_CLASP_TOG
Motif
Other DBs
NCBI-GeneID:
107915526
NCBI-ProteinID:
XP_040935104
UniProt:
A0ABM2YX80
LinkDB
All DBs
Position
A10:72234441..72255030
Genome browser
AA seq
2724 aa
AA seq
DB search
MATPSHAQAVKSLNKSEGRRRFVFKTFSQRIDDIDINVFRSLEKIKSEPSQGSTFLCDCL
IEWRELNTAEDFISFYVETMPLVQTLPSVLLHKDLIFDKLISRLQMKARLSLEPILRLLA
AFSRDLLKDFLLFLPRIVDSLVSLLKSGADREPDILEQIFTSWSYIMMYLQKYLIRDVIH
VLKVTVRLRYYPKDHVQEFMAEATSFLLRNAPVEQLIKGIRKTMFEVVKKPLPIRKSGVS
ALLCYIMLGTSSRFHSGAQRVLRLLVDNSIFAIGDKFPEGSDAILEVVITSFQKLTEELE
AKELNLMWECLYQEISETLAHGSCLHLGRLLSLLISSLQVNSGRSILDYRRMLEVVESLV
PKVIFPSSQGNGSLSDVVDKVLQLVLHILDGLHGSNNLSTISGCLLQWAPIFELRNSSLL
TFLRELLLRDPCVIYFFKDYALSAMNDLVESSQEEVLFLLLSFFERLQLHPQSTKCLDEM
SEGRLSKICDYMQGVISNWIKLINDIAIGNPLTAQIDEAKLAILWGIISCYPYMFDVRAS
ESALIELIDALQRLLVIEDESIAGVSKHTWESLVGAALGSHNKWHNVKKVGFGEISKVLD
LSKACKSSSQVLFAVADYLDNVNGPALQADSSKETCHPLLKGENMVDAVGIFADSLCHPD
KGIRLPTLRILCHYEPLNCETSAKDQHAEKKMKTEVSQAGIIDTDESNVLQLLMSIEATP
LSISTSRKVTLLISKIQMGLSAGRIPETYVPLVLNGIIGIFHNRFSYLWDAASECLAVLI
SKHTGLVWDKFISYFDHCQSLVQAPDVQHDRDNGNLSDSSSDLVRRFDLFVNPASDNTPG
TAVLSLLLQSLQKIPSVAESRSRQIIPLFLRFLGYDSDSLVSPGSFNSDIYEGKEWKGIL
KEWLGLLKLMRNPRAFYRSQFLKDVLQSRLLDDNDADIQARVLDCLLLWKDDFLLPYDQH
LKNLINSKYLREELTTWSLSKEAGLIEEVHRVHLVPLVVRLLIPKIRNLKTLASRKNASV
HLRKAVLGFIAQLDSNELHLFFALLLKPLQIIPNEDGYASNLYSNPIDEFHSLNFLKYFT
VENITALSWKKRYGFLHVIEDIMGVFDEFRVRPFLDLLMGCVVRVLASCSSNIDTAKVAE
SSPVRDHPDAEMISDDKDSAAANHVKIGTGIKQFKDLRSLCLKIVSLVLNKYEDHDFGTE
FWDLFFTSLKPLIYAFKQEGSSSEKPSSLFSCFLAMSQSLQLVSLLCRERNLVPDIFSIL
TVPTASEAIVSCVLKFISNLLDLDCELDEENSPIKSLICPNLEALVCSLHHLFQSDKASK
RKLVRCPGETEIRIFKLLLKYIRNPLLAMKFVDILLPFLSKRVQGSDICLKAIQVIQDII
PVLGNERTPEILNAVAPLLVYAKLDIRVLICNLLEALARTNSSVLVVARHVRQLNATSAF
ELDELDYDTIGQAYEGIGIGFFQSVPVEDALLILSQTVYDMSSDELILRHHAYRLLLTFL
DFSAKILGQEVTDHNETAEEIMTVDEGCWTRACVQRIINKFLLKHMGDAISRGTSVRKEW
IDLLREMVIKLPQLENLNLFRALCSEDADQDFFNNIIHLQKHKRAKALSRFADVINKTYM
SMDIINKVFLPLFFNMLFDLQHGKDEHIRTACMQALASVSAKMEWKSYYALLLRCFSEMK
KNPDKRKVLLRLICFILDRFDYSKFCSGQEAINSVDNILGSETNSFVSSAMQKGGSSIMV
SEIQTSLQKTVLPKIQKLLSSDSDNVNVSISLAALKLLKLLPGDVMESQLSSIIHRISNF
LKNRLESIRDEARSALAECLKVLGLEYLQFIIRVLRATLKRGFELHVLGYTLNFLLSKTL
SSSSDESLDYCLEDLLGVVENDILGDVAEEKEVDKIASKMKETRKCKSFETLKLIAQSIT
FKIHAFKLLSPVTSHLQKHLTPKVKSKLENMLKHIADGIECNQSVNQTDLFVFVYGLITD
ATNDEYGSGVSSIGTEANKHGNVVSEKIVSPDQAFKTKSACSHLITTFALGVLQNRIKSM
KLDRNDEQLLSMLDPFVQLLGNCLSSKYEDILSACLRCLTPLVRLPLPSLESQADKLKVT
LLGIAQGSVNPGNRLMESCLKLLTVLLRSTKITLSSDQLHMLVQFPVFVDLERNPSFVAL
SLLKAIVNRKLVVHEIYDIVVQVAELMVTSQLEPIRKKCSQILLQFLLDYHLSEKRLQQH
LDFLLANLRYQHPTGRESVLEMLHTIMIKFPKAIVDEQSQTIFVHLVVCLANDQDNKVRS
MTGAVIKLLIGRISQHSLNSILEYSLSWYLGEKQQLWSAGAQVLGLLVEVMKKNFQRHIS
SILPVTKRILHSAIDAFTNMMMDLPDEATIPFWKESYYSLIMLEKMLHHFHDLIFERELE
VIWEMICELLLHPHAWLRNVSNRLLSLYFTCANESKRGSVVKSNGSLFLMKPSRLFMIAA
SLCCQLKGPIDDDEAAVKDVKLGAKKKNEKNHNHRSGLITKNLVFSICCLNSLMKEWAGV
NRREFWSTFEQHEQERFLKAFRLLNSRKATGMLLSITGATDDQNDADHSEDLQYLLLSNL
LKELGKLALQMEAIQMRIVFYSFQKILPEIDQDDSRHYASLMMFPLYKVCEGFAGKIMTD
DLKQLAQEVLGSIRNSIGSQEFAQVYSEIKKKLKSKRDKRKRDEKRMAVINPVCNAKRKL
RIAAKNRANKKRRIMAMKMERWMR
NT seq
8175 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaccctcgcatgctcaagctgtcaagtcgctcaataaatctgagggtcgtagg
cgctttgttttcaagactttctctcagagaatagatgatattgatattaatgtatttaga
agcctagaaaaaatcaagtcagagccctctcaaggttcaactttcctttgtgattgcctt
atcgagtggagggaattgaatacagcagaggatttcatttcattttatgtggaaacgatg
cctcttgtacagaccttaccctcggtactcttgcacaaggacttgatatttgataaactt
atatcccgcttacaaatgaaagcgagattatctctcgagcctatactcagattgttggca
gccttctccagagatcttctcaaagattttcttttatttctgcctaggattgttgattcc
ttagtatctctcctcaaaagtggtgcagatagggagccagatatccttgagcagattttt
acttcatggtcatacattatgatgtatttgcagaagtatcttatacgggatgtcatacat
gttctcaaggttactgtgaggttgaggtattacccaaaggatcacgtccaagagtttatg
gcagaggctacatcattcttgctgcggaatgcacctgttgagcaacttataaaaggtatt
aggaagaccatgtttgaagttgtgaagaaaccattacctatccggaaatctggagttagt
gctttgttatgttatattatgttaggaacctcatcaaggttccattctggagcacagaga
gttttgcgattattggtggataattcaatatttgctattggtgataagtttcctgaaggc
tcagatgctattcttgaagttgtgattacttcctttcaaaaattaactgaggagctagaa
gccaaggagttaaatctaatgtgggagtgcttgtatcaggaaataagcgagactctagct
cacgggtcttgcttgcatctaggtcgtcttttatcgctgctaatatcttctcttcaggtt
aatagtgggcgtagtattttggactatcgacgaatgcttgaagttgtagagtccttggtg
ccgaaagttatattcccttctagccaaggaaatggtagtttatctgatgttgttgataaa
gttctgcaactagtgctacacattcttgatggactccacggttctaataatttgtctacc
atctctggctgtttgttgcagtgggctcctatatttgagttaagaaactcaagtttgttg
acttttctcagagaactactgctgagggacccatgtgtaatatattttttcaaagattat
gctttaagtgctatgaatgatctggtagaatcttcacaagaagaagttttattcctgttg
ctgtctttctttgagagactgcaactgcatcctcaaagcactaaatgcttagatgagatg
tccgaagggagactttcgaagatatgtgattatatgcaaggggttatcagtaactggatc
aagcttataaatgacattgcaattggtaatccattaactgctcaaattgatgaggccaag
ttggctatcttgtggggaattataagctgctatccatatatgtttgatgtccgagcgagt
gaatctgccctgatagagttaatagatgcactgcagcggcttctggtgattgaggatgaa
agtattgcaggagtttccaaacacacttgggagagcctagttggtgctgctttaggttct
cataataaatggcataatgtaaaaaaggttggatttggagaaattagcaaagttttggac
ctttccaaggcctgcaaatcatcctctcaagtactatttgctgtcgctgattacttggat
aatgtgaatgggcctgcattgcaagctgatagcagcaaggaaacatgtcatcccttgctt
aaaggggagaatatggtggatgcagttggcatatttgctgatagtttgtgccacccagat
aaaggaattcgtcttcctactctaagaattctgtgccattacgagcctctcaattgtgaa
acttctgctaaggatcagcatgctgagaagaaaatgaagacagaggtttctcaggctggt
attattgatactgatgaaagcaatgttcttcagctcttaatgtctattgaggctactcct
ctttcaatttctaccagcaggaaggttaccttactgatatctaaaatacagatgggcctc
tctgctggaaggatacctgaaacatatgtacctctcgttttgaacgggataattggcatc
ttccataatcgttttagctatctatgggatgcggcttctgagtgccttgcagttctaatt
agcaagcacactggactagtctgggataaatttatttcttattttgaccattgtcagtcc
ctggtacaagcacctgatgttcaacatgacagagataatggaaatttatctgactcatct
agtgatcttgtaaggcgattcgatttgtttgtgaatcctgcatctgataacacaccaggc
acagcagttttgtccttgttgctccaatctttgcaaaagattccttctgttgctgaatct
cgatcccgtcaaattatacccctatttttaaggtttttgggctatgatagtgatagtctt
gtgagcccgggttcattcaattcagacatttatgaagggaaagagtggaagggtatccta
aaagaatggctaggcttgttaaaactgatgaggaaccccagagcattctatcgaagtcaa
tttctaaaagatgttctgcaaagtaggctgctagatgacaatgatgctgacatacaggca
agggttcttgattgccttttattgtggaaagatgacttcttactcccatatgaccagcat
cttaaaaatctaatcaattcaaaatatctgagagaagagctgacaacatggagtttatct
aaagaagccggtttaattgaggaagttcatagggttcatctggtgcctttagttgttcgc
ctcctgatcccgaaaatcagaaacttgaaaacgcttgcttcacgaaagaatgcaagtgta
catcttcgaaaggcagttcttggtttcatagctcaactggattctaatgagctccatctt
ttctttgccttgttattgaaacccttgcaaattataccaaatgaagatggttatgcttct
aatttgtattcaaaccctatcgatgagtttcactccctaaattttctgaaatacttcacc
gtggaaaatataacagccctttcctggaagaaaagatatggttttctgcatgtaattgag
gatattatgggtgtttttgatgaatttcgtgtcagaccttttcttgatctattaatggga
tgtgttgttcgggtattagcaagctgcagttctaacatagacactgccaaggttgctgaa
tcctctcctgtacgtgatcatcctgatgctgagatgatctctgatgacaaagacagtgca
gcggcaaaccatgtgaagattgggacgggcatcaagcagttcaaagatttgaggtctcta
tgtttgaaaattgtttctcttgttctcaataaatatgaggaccatgattttggtactgaa
ttctgggacctgttttttacatctttgaaacccttaatttatgccttcaagcaggagggt
tctagtagtgaaaaaccaagttccttgttctcttgctttttggctatgagtcagagcctg
caacttgtgtccctactttgtagggaaaggaatcttgttccagatatattttcaattcta
actgttccaactgcttcagaagctattgtttcttgtgttctgaagtttatttcaaacctg
cttgatcttgattgtgagttggatgaagaaaacagtcctataaagagtttgatatgtcca
aacctagaagcacttgtctgcagcttgcatcatctttttcagagtgataaagcatccaag
agaaaattggtcagatgtcccggggaaacagaaatcagaattttcaaattgctgttgaag
tacatcagaaatccattgctggcaatgaaatttgttgatatcttgctccctttcttatca
aaaagagttcaaggttctgacatctgtctcaaagccatacaagtcattcaagatatcatt
cctgtgctagggaatgagagaacccctgaaatccttaatgcagttgctccacttcttgtt
tatgctaaattggatattcgagtgttaatttgcaatcttcttgaagcacttgctagaact
aattcgtctgtacttgtggtggctagacatgtcagacaattaaatgcaacctcagctttt
gagttggatgagcttgattatgacactataggacaggcatatgaaggaattggaattgga
ttcttccaatctgtgccagtggaggatgcattacttattttgtcacaaactgtatatgat
atgtcatcagacgaattaatcttaaggcaccatgcttataggttattgcttacatttcta
gatttttctgccaaaattcttggccaagaagttacagatcataatgagactgctgaagag
attatgacagttgatgaaggctgttggacacgagcatgtgttcagcgtatcattaacaag
tttcttttaaagcatatgggggatgcaattagtcggggaacttctgtgagaaaggaatgg
attgatttactgcgagaaatggttataaagcttccgcagttagagaatcttaatttgttc
agagctttatgctctgaagatgctgatcaagattttttcaataatatcattcatttacag
aaacataagagagcaaaggctttgtctcgctttgcagatgttatcaataaaacctatatg
tctatggatatcattaataaagtgttccttccactctttttcaacatgttgtttgattta
caacatggaaaggatgagcatattagaactgcttgcatgcaagcacttgcttcagtttct
gctaagatggaatggaaatcatactatgcattactgcttcgctgctttagtgagatgaag
aagaatccagacaagcggaaagttctcttacggttaatttgctttatcttggacagattt
gattattcaaaattttgttccggtcaagaagcaataaattccgtagacaacattttaggt
tctgaaaccaatagttttgtttcttcagcaatgcagaaaggtggcagttctattatggtt
tctgagatacagacttctcttcagaaaactgttttgccaaagatacagaaattattgagt
tctgattctgataatgtcaatgttagtatcagtcttgcagcactgaaacttctgaagttg
cttccgggagatgtaatggagtctcagctttctagcatcattcatcggatttcgaacttt
ctaaagaaccgtctagaaagtattcgtgatgaagctagatctgcattggctgaatgtttg
aaggtgcttggacttgaatacctgcaatttataattcgagttttgagagcgaccttgaaa
cgtggatttgagctgcatgttctaggatatacacttaattttcttttgtcaaagaccctt
tcaagttcttctgatgagagtttggattattgtttagaagatctccttggtgtggttgaa
aatgatattcttggagatgttgctgaggagaaagaggtggacaagattgcttctaaaatg
aaagaaacgagaaagtgcaagtcgtttgaaaccttgaaactgattgcccaaagcataact
ttcaaaatccatgcattcaagcttctttctcccgttacaagtcacttgcaaaagcatctg
actccaaaagtgaaatcaaaattggagaatatgttaaagcacattgcggatggaattgag
tgtaatcaatcagtaaatcagactgatctcttcgtttttgtatatggcctcataacagat
gcaactaatgacgaatatgggtccggtgtgagttcaattggcacagaagcaaataaacat
ggaaatgttgtcagtgagaaaattgtttctccagaccaggcttttaaaactaaatctgca
tgttctcaccttattaccacgtttgcactaggggttttacaaaatagaataaaaagcatg
aaattggacagaaatgatgagcaactattatcaatgttggatccatttgtccaattgctt
ggcaactgcttgagttccaaatatgaagatattttatctgcatgccttagatgtcttact
ccattggtgaggctgcctcttccatcccttgaatcccaggctgataaattgaaggtgaca
ctgttgggtattgcacaaggttctgtgaatcctggcaatcgtcttatggaatcgtgtcta
aaattgttaactgtacttctgcgaagcacaaaaatcacattatcctcggatcagttacat
atgttagtccagtttccagtgtttgtggatcttgaaaggaatccctcctttgttgccctc
tcacttctaaaggcaattgttaaccgcaagctagtggttcatgagatctacgatattgta
gttcaggttgcagaattgatggtaactagtcagctggaaccaattcgcaagaaatgcagt
cagatcttgttgcagttcttacttgattatcatctttcagagaaacgcttgcagcaacat
ttagatttcctgcttgcaaatctaaggtatcagcatccaactgggagagaatctgtgctt
gaaatgcttcacacaattatgataaaatttcctaaagccattgttgatgagcagtcacag
accatatttgtccacctggtggtgtgcttggctaacgatcaagataataaagttcgttct
atgactggtgctgttataaagctccttattggtcgtataagccaacattcactgaattcc
attcttgagtatagtctgtcctggtatttgggtgagaagcagcaactgtggagtgcaggt
gcacaggtattaggattactggtcgaggtcatgaagaaaaattttcagaggcatataagt
agcatattgccagtgactaaaagaattttgcactctgctattgatgcttttaccaacatg
atgatggatctccctgatgaagctactattcctttctggaaagagtcatactattcacta
attatgttggagaagatgctacatcattttcatgatttaatatttgaaagggagcttgag
gtgatttgggaaatgatatgtgagttgctgttgcatccacatgcatggttacgcaacgta
tccaatcgccttctctccttgtattttacttgtgcaaatgagtctaaaagaggaagtgtt
gtgaagtcgaatggatctttatttcttatgaagccaagtagactttttatgattgctgct
tctctttgctgccaactgaaaggacctattgatgatgatgaggctgctgttaaggatgta
aagcttggtgctaagaagaaaaatgagaagaaccataatcaccggagtggtttgattaca
aaaaatctcgtgttctctatttgttgtctgaactccttgatgaaagagtgggctggtgtg
aaccgcagagagttctggtctacttttgaacagcatgagcaggagcggtttcttaaagcc
tttcgattgcttaattcgaggaaagcaactgggatgcttctgtccattactggtgccaca
gatgaccaaaatgatgcagaccattctgaggaccttcaatatctgcttctctcaaatctg
cttaaggagctgggcaagcttgctcttcaaatggaggctattcagatgaggattgtcttc
tatagtttccagaaaattttaccagaaattgatcaggatgattctcgacattacgcgtcg
ctaatgatgtttcctttatataaagtttgtgaagggtttgccggaaaaattatgaccgat
gatctaaagcaattagcacaggaagttttggggagtattcgaaacagtataggcagccaa
gaatttgcacaagtttacagtgagatcaagaaaaaactaaaatcgaagagggataaaagg
aaaagagatgagaagcgcatggctgttatcaacccggtctgcaatgccaagaggaagttg
cggattgcagccaagaatcgtgctaacaagaagaggaggataatggcaatgaaaatggaa
agatggatgcggtaa
DBGET
integrated database retrieval system
